Intrepid Bioinformatics Software

Intrepid Bioinformatics offers a solution to help you with your data management needs when it comes to genetic data. Whether NGS data in BAM or FastQ format or SNP Chip data in .ab1, .vcf, or other similar formats, your data is secured by our Oracle® database and ready to visualize and analyze. It can be made visible only to you or shared with parties of your choice. You can even choose to publicize your data if you wish!

Our open API allows you to have full programmatic control over your data, essentially treating the database like one large file system. With minimal work, you can write your own analysis software or alter your current software and statistical packages to integrate with your data on our servers. No need to mess with data stored in multiple locations on various hard drives or servers.

NGS data:
Intrepid Bioinformatics is proud to announce the release of its new service supporting Next Generation Sequencing (NGS) data (run on Oracle Database 11gR2 and Linux 5.5). This new service is designed to improve how you interact with your NGS data, ensuring a safe, secure environment in which you can freely access and collaborate on your data.

When you send us your BAM or FastQ files, we make them available only to you on our Oracle® database and, if you choose, available to colleagues or even the public. We have enhanced the Integrative Genomics Viewer (IGV) to utilize our database, allowing you to quickly access your data without having to download large files over and over again or ship around cumbersome hard drives. If you wish to go beyond visualization with the IGV, you can use our open API to plug in your current analysis tools or design new ones from scratch. Our web services are designed to act like a file system allowing you to query directly, so we do not get between you and your data.

SNP and Genotype Data:
Our service is designed to improve how you interact with your data so that you can visualize it, perform your own analyses, and share data with collaborators, clients or even with the public.

When you send us your SNP data, we can map it to known genomes and make it immediately available for visualization. Our gene browser allows you to examine your data all the way down to the Sanger traces. You can view polymorphisms, exons and introns, allele frequencies, and more. Further, our open API allows you programmatic access to your data in a quick and easy manner akin to a file system on your computer so that you can design your own analyses and modify any tools and software you have to work with your data on our servers.

Software Link:  Intrepid Bioinformatics Software

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