OriginPro - Data Analysis Management software

OriginPro offers all of the features of Origin plus extended analysis tools in the following areas:

1. Peak Fitting
2. Surface Fitting
3. Statistics
4. Signal Processing
5. Image Handling

Peak Fitting
The Peak Analyzer tool in OriginPro provides the additional capability of finding and fitting multiple peaks in your spectra. Baseline anchor points can be customized and fit with a suitable fitting function, and the baseline fitting can be included as part of the final peak fitting process. A detailed Fit Control dialog is provided to control all aspects of peak fitting including mixed peak functions, peak centers and widths, sharing parameters, and imposing bounds and linear constraints on parameters. Graphical as well as tabular results are generated as part of the final fit report.

Surface Fitting
OriginPro can fit a 3D surface to XYZ data points. The surface and data points can be displayed together, including droplines from the points to the surface.

Statistics
OriginPro expands on the statistical analysis capabilities of Origin by providing additional tools in Descriptive Statistics, Discrete Frequency counting, normality tests, correlation analysis, one-way and two-way Repeated Measures ANOVA, many nonparametric tests such as Friedman ANOVA and Two-Sample Kolmogorov-Smirnov Test and Mann-Whitney Test, Survival Analysis tools including Weibull Fit and Cox Proprotional Hazard Model, ROC Curves, and Power and Sample Size tests.

Signal Processing
Advanced signal processing features in OriginPro include Short-Time FFT (STFT), Hilbert Transform, Coherence, 2D FFT and 2D FFT-based Filtering, 2D Correlation, and Wavelet analysis.

Image Handling
OriginPro offers more ways to handle your image data, including alpha blending, pixel logic, morphological filtering, and interpolated background subtraction.

Analytical Power
With so much analytical power, OriginPro is the software of choice for those who want a single data analysis and graphing solution.

Software Link: OriginPro - Data Analysis Management software

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BioRS™ Integration and Retrieval System

BioRS™ Integration and Retrieval System
The BioRS™ Integration and Retrieval System allows multiple public, commercial and proprietary databases to be combined and integrated into a unified environment. Flat-file and relational databases (inclucing Oracle® and MySQL™) with diverse formats are easily integrated using Web or command-line interfaces and standardized data formats based on Extensible Markup Language (XML).

Retrieve data conveniently
The BioRS Integration and Retrieval System quickly and efficiently retrieves biological data from public and proprietary databases. Researchers can easily search multiple, diverse databases simultaneously with a single query. The following are just a few examples:
Show protein information from UniProt together with information from EMBL
Select genes from BioRS query results and retrieve similar sequences from your proprietary database
Find all human kinases with transmembrane domains which are associated with liver cancer
Retrieve specific bacterial genes for antibiotic resistance and export them to plan cloning experiments
Download a list of all plant storage proteins for input into pattern searches to find protease cleavage sites

Connect data, connect teams
Scientists can locate related information from multiple sources using extensive cross-linking between databases and combined reports. A convenient database search environment is provided for diverse users - whether occasional user, every-day user or expert. Convenient tools are available for viewing and exporting retrieved information, and additional tools can be integrated as necessary.

Share data securely
The BioRS system ensures security within a distributed environment and allows safe data sharing among members of a large group in multiple locations. Because the BioRS system does not require Internet access, maximal confidentiality is ensured. Resource and user management is available using convenient Web and command-line interfaces. Individual users and user groups can be assigned privileges for controlling access to sensitive information.

The BioRS system as an information backbone
The BioRS system can be run as a stand-alone data integration and retrieval system or, alternatively, can be used as an information backbone supporting other software, such as the Pedant-Pro and BioXM systems. The screenshot below shows the BioRS system running as middleware for the BioXM Knowledge Management Environment.

Software Link:  BioRS™ Integration and Retrieval System

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ActivityBase Suite - Data Management Software

ActivityBase Suite is the world's leading solution for high volume routine screening, through to low throughput data management in large and small organizations. It is proven to efficiently and effectively manage small and large molecule research, ranging from drug discovery to biofuel innovation.

Scalable - Store and register any HTS, HCS and low throughput campaigns
Secure - Real time data analysis with built in quality control (QC) and business rules
Automate - Plate and non-plate based test design and mapping, accelerating analysis
Link - Directly to instruments for error free data import and analysis

Software Link:  ActivityBase Suite - Data Management Software

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TIBCO Spotfire software - Data discovery

TIBCO Spotfire software is a comprehensive platform that delivers a full range of data discovery capabilities from simple dashboards to predictive analytic applications.

Key Features:

• Analyze and explore data with intuitive, interactive visualizations
• Bar charts, scatter plots, treemaps, box plots, map charts etc.
• In-Memory data architecture provides incredible speed and flexibility
• Directly access corporate and local data sources, including spreadsheets
• SAP BW, SAP R/3, Oracle eBusiness Suite, Salesforce.com, any ODBC database
• Excel, csv, any flat data file
• Create and distribute analytic applications for the Web
• Zero Footprint Client; no coding required
• Easily create sophisticated statistical analyses
• Tight integration between S+ statistical package and Spotfire
• Analyze event-driven and real-time data
• Tight integration with TIBCO infrastructure products 

Software Link:  TIBCO Spotfire software - Data discovery

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ChemBioViz - visualization and analysis Software

This premier visualization and analysis suite includes ChemBioFinder Ultra 12.0 (with ChemBioViz Pro 12.0), ChemBioDraw Ultra 12.0, ChemBio3D Ultra 12.0, ChemBio3D interfaces to Schrodinger's Jaguar and Gaussian, GAMESS Pro 12.0, ChemDraw/Excel and CombiChem/Excel, STATISTICA Base, MNova Std/Lite, the ChemDraw and Chem3D ActiveX Pro Plugins & Controls, and ChemScript Pro 12.0.

ChemBioViz Ultra 12.0 adds ChemBioFinder Ultra, ChemBioDraw Ultra, ChemBio3D Ultra, ChemBio3D interfaces to Schrodinger's Jaguar and Gaussian, ChemDraw/Excel and CombiChem/Excel, ChemNMR, Name=Struct, ClogP, and ChemScript Pro to ChemBioViz Pro 12.0.

ChemBioViz Ultra 12.0 provides the premier ChemBioOffice 2010 applications in a tightly integrated visualization suite, allowing users to visualize and analyze their structures and data graphically, and identify trends and correlations within subsets of data. Retrieve or search for a set of compounds, choose the data you want to see, whether it is biological test results, physical property values calculated automatically or prices in a catalog, and ChemBioViz will generate an interactive window showing a scatterplot, histogram, or other useful data graphic. Show Property predictions Live-Linked to the structure, Fragmentation tools, 3D structures Live-Linked to the 2D structure and more!

Software Link : ChemBioViz - visualization and analysis Software

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E-WorkBook Suite - Data Management Software

E-WorkBook Suite is a flexible, extensible framework for the capture, analysis, searching and reporting of experimental data in a fully compliant, 21 CFR Part 11 validated environment. The E-WorkBook Suite provides an environment that:
Captures and protects corporate intellectual property and ensures effective data security
Boosts research productivity and efficiency by improving data accessibility, promoting knowledge sharing and reuse of data across an organization, thereby minimizing duplication of work
Is highly adaptable to meet the needs of all researchers, from any research biologist to the medicinal or synthetic chemist
Reduces the burden of paper notebooks/paper trails
GxP and Validation, E-WorkBook Suite fully meets the requirements for GxP and 21 CFR Part 11 by providing administrator definable access control, granular audit trails and electronic signature sign off
E-WorkBook Suite provides a plug-and-play integration with digital signatures and is also certified by SAFE-BioPharma, the industry's signature standards bod.

Software Link: E-WorkBook Suite - Data Management Software 

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IO Informatics - Life science Data Management Software

Today life sciences industries face unprecedented demands to reduce clinical and administrative costs, manage data from myriad sources, and improve team productivity. It is vital to the success of any life-science organization to improve efficiency and cost containment.

Harnessing the explosion of data is a constant challenge for life sciences organizations. In an ever-changing environment, locating and accessing information can consume a vast amount of resources.

"The increasing number of failures in the early stages of drug development is causing a bottleneck that threatens drug makers' efforts to rebuild their inventory of new drugs, according to a top Wyeth official. 'Success rates in Phase II studies have fallen from 40% to 25% in just five years, while the time it takes for the studies to reach their conclusions has doubled to almost three years since 2000.'"

Sentient solutions for life sciences optimize the flow of data, enabling organizations to track life-cycle information from early-stage data acquisition and R&D right through to FDA submission.

"The Sentient Suite expedites our biomarker discovery, creating the ability to raise the visibility of proteins of interest and to find and link them to related information"

Using Sentient software, users can dramatically improve efficiency through integrated data analysis. Users can search, link, correlate, and manipulate data sets, including scientific data, images, databases, spreadsheets, web content, proprietary video, and file formats.

In contrast to most current data integration methods, Sentient solutions minimize disruption of existing infrastructure, use existing infrastructures, and can be installed on standard laptop computers.

Software Link:  IO Informatics - life science Data  Management Software

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GeneSpring Workgroup - Data Analysis software

Agilent's GeneSpring Workgroup provides a robust data management and analysis environment for GeneSpring data and analysis results. It combines a highly scalable architecture, a rich set of analysis tools, and a series of programmatic interfaces that enable multi-campus enterprises to maximize the value of their research.

Details

Agilent's GeneSpring Workgroup provides a robust data management and analysis environment for GeneSpring data and analysis results. It combines a highly scalable architecture, a rich set of analysis tools, and a series of programmatic interfaces that enable multi-campus enterprises to maximize the value of their research.

Store and protect GeneSpring multi-omics data and analysis results
Publish static images
Secure access to any experimental data
Browser interface to search for available experiments
Web Client to view analysis results
Compatibility with Oracle or MySQL database 

 

Software Link: GeneSpring Workgroup - Data Analysis software 

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KaleidaGraph - Data Analysis Management software

KaleidaGraph contains the comprehensive toolset you need to get your graphing and data analysis done quickly and easily. Period. No costly "bells and whistles" that you rarely use. No complicated software that costs you valuable time and takes you away from your science. Just exceptional, accurate graphing and analysis at a remarkable price.

Details

KaleidaGraph contains the comprehensive toolset you need to get your graphing and data analysis done quickly and easily. Period. No costly "bells and whistles" that you rarely use. No complicated software that costs you valuable time and takes you away from your science. Just exceptional, accurate graphing and analysis at a remarkable price.

Flexible Data Entry.
Begin your analysis by either opening a data file or entering data using the keyboard. Excel files may be opened directly. Tab, space, and other delimited text files use a very flexible import facility.

Fast and Versatile Graphing Choices.
Create plots quickly and easily using entire data columns or just a selection of your data. Data can be spread across multiple files and seamlessly integrated into one powerful graph to best explain your work. Plot types include: Line, Scatter (X-Y), Double-X, Double-Y, Histogram, Box, Percentile, Horizontal Bar, Stack Bar, Column, Stack Column, Polar, Pie, Summary Column, Double Y Bar, Double Y Column, Dot and Function (enter a formula).

Complete Control over Every Plot Option.
To customize every detail of your plot, simply click directly on each plot element, and a make the logical choices to best illustrate your data. You can modify the axis limits, text labels, tick marks, legend, line thickness, marker shapes & sizes, and more.

Templates.
When you create a graph you like, save it as a template so you can use it with repetitive data sets for a consistent presentation.

Powerful Data Analysis and Manipulation.
Easy-to-use commands for analyzing your data include a variety of basic statistics, Student t-test, ANOVA, and Wilcoxon. Use the Formula entry window to manipulate your data using over 100 algebraic equations and statistical functions from convenient menus.

Error Bars.
Add error bars to your plot where the error can be specified in a data column or can be calculated by KaleidaGraph.

Precise Curve Fitting.
Apply a variety of curve fits to your plot. We supply 9 generic fits, including Least Squares (Linear) Regression and Smoothing fits, plus a library of over 100 industry-specific formulas. Utilize one of these predefined fits or enter your own equation for your data. All fits are calculated with incredible speed and accuracy.

Effortless Printing and Plot Export.
Use KaleidaGraph's page layout window to create multigraph presentations. Choose simple features that rearrange and resize your graphs. Then add text, colored backgrounds, and graphics as needed to achieve a professional result. Easily export graphs to PowerPoint, the web, or a favorite application using popular file formats. 

Software Link: KaleidaGraph - Data Analysis Management software

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Origin - Data Analysis Management software

Origin is a software application with tools for data analysis, publication-quality graphing, and programming.

Data Analysis
Origin contains powerful tools for all of your analytic needs, including peak analysis, curve fitting, statistics, and signal processing. To make data analysis more efficient, Origin supports many common formats for importing data, and exporting results. Multi-sheet workbooks and an integrated Project Explorer help you organize your Origin projects. Streamline your workflow by saving workbooks as analysis templates for repeat use.

Graphing
With over 70 built-in graph types, Origin makes it easy to create and customize publication quality graphs to suit your needs. Many popular contour, 2D, and 3D graph types are supported, as are specialty graphs such as windrose, stock (OHLC), ternary (including ternary-contour), 2D vector and 3D vector, and several statistical plots.

Programming
Origin includes two built-in programming languages: Origin C, a C-based compiled language, and a scripting language called LabTalk™. Use them to automate graphing and analysis. Origin comes with an Integrated Development Environment (IDE), Code Builder , that makes it easy to write and debug your own code. Origin is also an Automation Server for users of VB, C++, C# and LabVIEW™.

Detailed Pricing

$550 for academic users $1,095 for commercial users 

Software Link: Origin - Data Analysis Management software

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GraphPad Prism - Data Analysis Management software

GraphPad Prism is a powerful combination of basic biostatistics, curve fitting and scientific graphing in one comprehensive program. More than 100,000 scientists in over 100 countries rely on Prism to analyze, graph and present their scientific data.

What makes Prism the program of choice for many of the world's leading universities, medical centers, research institutes and pharmaceutical companies? Prism certainly has all the capabilities you would expect from a top notch scientific graphics program, but what makes Prism truly unique is not what it does, but how it does it. Designed for the practical scientist, Prism does not expect you to be a statistician. It guides you through each analysis - giving you as much help as you need - and tracks and organizes your work like no other program available. You can concentrate on your data, not fight with your software.

Software Link : GraphPad Prism - Data Analysis Management software

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Stat-200 - Data Analysis Management software

Stat-200 is a remarkably comprehensive general statistics package. It incorporates all the descriptive statistics, parametric and non-parametric statistical tests, graphics and data transforms you will need for processing, analyzing and presenting data. Parametric tests and procedures in Stat-200 total 60 and there are 66 non-parametric tests and procedures and 30 different descriptive statistics. ANOVA is comprehensive and includes general N factor analysis. Many unusual procedures are included e.g. survival analysis. All tests have associated information windows which give literature references and other facts to assist in getting the right one for the job. Probabilities are calculated directly so there is no need to use tables.

Stat-200 has a state-of-the-art user interface with all its statistical and plotting modules easily selected from the logical tree views. Procedures you use frequently can be placed in a Favorites list for instant access. The workbook is a powerful tool for manipulating and selecting data. It can be any size, limited only by your computer hardware. More than 65 data transforms are supplied and there is a high-level language built-in to enable any transform to be programmed by the user. Data can be keyed-in and also either copied and pasted or dragged and dropped from spreadsheets. In addition, spreadsheet files in many formats can be directly opened. Stat-200 is readily integrated with databases and it supports Recordset tables for ODBC database connections enabling data and results to be easily passed back and forth.

Software LInk : Stat-200 - Data Analysis Management software

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MATLAB - Data Analysis Management software

MATLAB® is a high-level technical computing language and interactive environment for algorithm development, data visualization, data analysis, and numerical computation. Using MATLAB, you can solve technical computing problems faster than with traditional programming languages, such as C, C++, and Fortran.

You can use MATLAB in a wide range of applications, including signal and image processing, communications, control design, test and measurement, financial modeling and analysis, and computational biology. Add-on toolboxes (collections of special-purpose MATLAB functions) extend the MATLAB environment to solve particular classes of problems in these application areas.

MATLAB provides a number of features for documenting and sharing your work. You can integrate your MATLAB code with other languages and applications, and distribute your MATLAB algorithms and applications.

Key Features:

• High-level language for technical computing
• Development environment for managing code, files, and data
• Interactive tools for iterative exploration, design, and problem solving
• Mathematical functions for linear algebra, statistics, Fourier analysis, filtering, optimization, and numerical integration
• 2-D and 3-D graphics functions for visualizing data
• Tools for building custom graphical user interfaces
• Functions for integrating MATLAB based algorithms with external applications and languages, such as C, C++, Fortran, Java, COM, and Microsoft Excel 

Software link : MATLAB - Data Analysis Management software

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GraphPad InStat - Biostatistics Software

Most statistics programs are designed by statisticians, for statisticians. These programs are feature-packed and powerful, but can overwhelm scientists with thick manuals, obscure statistical jargon and high prices. GraphPad InStat is different. InStat is designed by a scientist for scientists.

Five reasons why you should choose InStat:
InStat guides you step by step
InStat conquers the learning curve by escorting you through statistical analyses. You'll master the program in just a few minutes - really.

Clear analysis choices with explanations
You don't have to know the name of the test you need. InStat helps you pick an appropriate test by asking questions about your data. If you are unsure, consult the extensive help screens, which explain the statistical reasoning in plain language.

Easy to understand results
InStat does not assume that you are a statistics whiz. It presents results in simple paragraphs, with a minimum of statistical jargon. InStat's help screens review the use of each test and explain every portion of the results.

Unique analysis checklists
With other statistics software, it is too easy to get the right answer to the wrong question. That's why InStat provides a unique analysis checklist. Double-check that your data have not violated any assumptions of the test, and that you have picked a test that matches your experimental design and really answers the question you had in mind.

A bargain
Most other statistics programs cost several hundred dollars, but we've made InStat affordable for everyone. InStat costs only $149 for single copies and $79 for upgrades. Buy InStat right now.

Software Link: GraphPad InStat -  Biostatistics Software

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geneXplain - Molecular biology Research Software

The geneXplain platform is an online toolbox and workflow management system for scientists in the field of molecular biology. Here, you can store and analyze your experimental data - including transcriptomics, proteomics, and ChIP-seq -, search for master regulator molecules, perform gene set enrichment analysis, and even add your own workflows and scripts.
Details
Key features of the platform:
• Collection, storage and analysis of experimental data
• Loading raw microarray data, BED files and more
• Statistical processing of raw data
• Comfortable work with tabulated data: comparison, joining, subtracting, sorting, etc.
• Mapping to Gene Ontology terms, Gene Set Enrichment Analysis
• Network clustering and search for master regulator molecules, visualization of pathway diagrams in several different layouts, export in a number of formats
• Dynamic simulations
• Browsing through several databases
• Possibility to graphically program a specific pipeline (workflow), and add new scripts

The geneXplain platform combines a growing number of analytical modules (bricks) under a standardized interface, which can flexibly be combined to comprehensive workflows via a simple drag-and-drop system. Predefined workflows are already available, as well as state-of-the-art bricks. Also, the scientific community is invited to add their own bricks as scripts or plug-ins into the platform.

A fully functional free trial account, as well as further information, is available on our homepage.

Software Link : geneXplain - Molecular biology Research Software

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