Partek Express: Gene expression analysis Software

Partek Express is a streamlined, easy to use software analysis tool designed for scientists who are new to gene expression analysis. Partek Express will guide you through easily setting-up robust and powerful statistics tests to identify genes whose expression is changed across different experimental variables or combination of variables.

The software supports complex experimental designs with multiple experimental variables including paired designs. Also, technical variables, such as batch effects or operator differences, are automatically controlled. All analysis methodologies are fully disclosed with references to streamline authoring of a methods section of a pending publication.

Benefits of Partek Express for Your Gene Expression Data:
Identify outliers samples for quality control
Use visualization to see how your samples group together and define how each phenotype contributes to the overall expression profile
Find and visualize the genes that change across specific experimental variables or a combination of variables
Determine the optimal degree of replication using power analysi.

Software Link:  Partek Express: Gene expression analysis Software

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GenomeTraveler - Genomics software

GenomeTraveler (GT) is a comprehensive software package for the analysis of whole genomes, which supports mapping of NGS fragments, mutation analysis, feature annotation and more.

Details

Key features of GenomeTraveler:
• Mapping of single- and paired-end fragments
• Contig mapping
• de novo assembly
• Import of mapping/assembling results from SAMtool, SOLiD, Velvet and Phrab
• Profile peak detection
• Mutation and SNP analysis
• Expression analysis
• The alignment viewer includes: search, annotation and comparative genome functions

GenomeTraveler is a program for next generation sequencing data analysis and annotation, which runs on Windows, Mac and Linux. It can handle data from Roche/454 GS FLX, ABI SOLiD and Illumina GA, and provides a graphical interface for smooth viewing and editing of mapping and assembly results.

The software runs on Windows, Mac and Linux and has been developed by in silico biology, Inc., in Yokohama, Japan. (http://www.insilicobiology.jp/en).

A free fully functional trial version, as well as further information, is available on our homepage.

Software Link: GenomeTraveler - Genomics software

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Pathway Studio - Pathway Analysis Software

Pathway Studio pathway analysis software helps you to interpret gene expression and other high throughput data, build, expand and analyze pathways, find relationships among genes, proteins, cell processes and diseases, and draw publication-quality pathway diagrams.
Details

• Pathway Studio augments your traditional way of working with literature with an immediate automatic access to all published facts in a single database and helps you to:
• Find major regulators of a disease mechanism, a stress response, or a cell process;
• Identify the most influential transcription factors or signaling pathways from gene expression data;
• Compile and visualize a network of protein relations from recently published literature or discoveries in the lab;

And more.

• You can analyze the following types of experimental data:
• Gene Expression (Affy, Illumina, Agilent, other platforms);
• Proteomic, protein IDs and abundance value (Mass Spec, 2D-gel);
• Lists of proteins, diseases, or small molecules.
• Pathway Studio comes with a selection of mammalian and other databases. Importantly, you can easily update Ariadne databases from the new PubMed content and experimental data.

Software URL: Pathway Studio - Pathway Analysis Software

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