SNP & Variation Suite is the most powerful and integrated collection of high-performance analytic tools for managing, analyzing, and visualizing large-scale, complex genomic data. It's fast, easy-to-use, and runs on conventional desktop computers enabling you to interact with your data as never before. Both statistically and visually, you can explore the relationships among vast amounts of clinical patient data, environmental factors, and genetic variants to understand the cause of disease and other traits - without writing a single line of code (unless you want to).
Details
YOUR DATA. YOUR ANALYSIS. YOUR DISCOVERY.
SNP & Variation Suite is the most powerful and integrated collection of high-performance analytic tools for managing, analyzing, and visualizing large-scale, complex genomic data. It's fast, easy-to-use, and runs on conventional desktop computers enabling you to interact with your data as never before. Both statistically and visually, you can explore the relationships among vast amounts of clinical patient data, environmental factors, and genetic variants to understand the cause of disease and other traits - without writing a single line of code (unless you want to).
ANALYTIC SOLUTIONS
SNP Analysis
Get the most out of your microarray data with the most complete set of SNP analysis tools.
Genome-Wide Association
Take GWAS to a new level with unparalleled performance on large-scale data.
Next-Generation Sequencing Analysis
Latest tertiary analysis methods for DNA
next-generation sequencing.
Copy Number Analysis
Optimal results with a complete set of quality assurance, CNV detection, and analysis tools.
LD and Haplotype Analysis
Powerful new plotting and analytics for linkage disequilibrium and haplotypes.
Family-Based Analysis
Cutting-edge analytics for virtually any family study design and ascertainment condition.
Data Management
Easily manage data of any size and type on a conventional desktop computer.
Data Editing and Enrichment
Real-time data editing, manipulation, and enrichment on large-scale data.
Quality Assurance
A robust toolset for quickly assessing and remedying sample and marker issues.
Genome Browser and Visualization
Explore data and results with unprecedented whole genome navigation and visualization.
Scripting and Integration
Innovate, integrate, and automate with a fully-programmatic Python scripting interface.
Runs of Homozygosity Analysis
Identify patterns of extended homozygosity and run statistical tests for association.
SVS MODULES
HelixTree
HelixTree is the core module of the SNP & Variation Suite. Its unique set of conventional and leading edge analytic tools empower you to quickly and easily perform a broad array of workflows for genetic association studies.
CNAM
CNAM, in conjunction with other SVS 7 modules, offers a complete set of tools for processing raw intensity data, identifying regions of copy number variation (CNV), visualizing copy number data, and performing association analysis on a variety of copy number covariates.
Whole Genome Analysis Module
The Whole Genome Analysis Module incorporates several technologies and methods designed to overcome the statistical and computational challenges of large-scale whole genome analysis.
Sequence Analysis Module
Rare variants require new methods that don't work in traditional common variant studies. With the introduction of an entirely new Sequence Analysis Module you now have access to the latest tertiary analysis methods to help you make the most sense of all that next-gen sequencing data.
PBAT
Developed in collaboration with Dr. Christoph Lange of Harvard's School of Public Health, Golden Helix PBAT delivers an exclusive and extensive array of advanced statistical routines for the design and analysis of family-based SNP and CNV association studies.
Regression Module
Perform advanced linear and logistic regression, stepwise regression, and permutation tests with numeric variables and recoded genotypes.
SVS Viewer
SVS Viewer makes collaboration easy, and it's completely free. Load projects or individual datasets created by someone with SVS 7. Then you can manipulate spreadsheets, edit node annotations, augment existing plots, or create entirely new ones.
Software Link: SNP & Variation Suite
Details
YOUR DATA. YOUR ANALYSIS. YOUR DISCOVERY.
SNP & Variation Suite is the most powerful and integrated collection of high-performance analytic tools for managing, analyzing, and visualizing large-scale, complex genomic data. It's fast, easy-to-use, and runs on conventional desktop computers enabling you to interact with your data as never before. Both statistically and visually, you can explore the relationships among vast amounts of clinical patient data, environmental factors, and genetic variants to understand the cause of disease and other traits - without writing a single line of code (unless you want to).
ANALYTIC SOLUTIONS
SNP Analysis
Get the most out of your microarray data with the most complete set of SNP analysis tools.
Genome-Wide Association
Take GWAS to a new level with unparalleled performance on large-scale data.
Next-Generation Sequencing Analysis
Latest tertiary analysis methods for DNA
next-generation sequencing.
Copy Number Analysis
Optimal results with a complete set of quality assurance, CNV detection, and analysis tools.
LD and Haplotype Analysis
Powerful new plotting and analytics for linkage disequilibrium and haplotypes.
Family-Based Analysis
Cutting-edge analytics for virtually any family study design and ascertainment condition.
Data Management
Easily manage data of any size and type on a conventional desktop computer.
Data Editing and Enrichment
Real-time data editing, manipulation, and enrichment on large-scale data.
Quality Assurance
A robust toolset for quickly assessing and remedying sample and marker issues.
Genome Browser and Visualization
Explore data and results with unprecedented whole genome navigation and visualization.
Scripting and Integration
Innovate, integrate, and automate with a fully-programmatic Python scripting interface.
Runs of Homozygosity Analysis
Identify patterns of extended homozygosity and run statistical tests for association.
SVS MODULES
HelixTree
HelixTree is the core module of the SNP & Variation Suite. Its unique set of conventional and leading edge analytic tools empower you to quickly and easily perform a broad array of workflows for genetic association studies.
CNAM
CNAM, in conjunction with other SVS 7 modules, offers a complete set of tools for processing raw intensity data, identifying regions of copy number variation (CNV), visualizing copy number data, and performing association analysis on a variety of copy number covariates.
Whole Genome Analysis Module
The Whole Genome Analysis Module incorporates several technologies and methods designed to overcome the statistical and computational challenges of large-scale whole genome analysis.
Sequence Analysis Module
Rare variants require new methods that don't work in traditional common variant studies. With the introduction of an entirely new Sequence Analysis Module you now have access to the latest tertiary analysis methods to help you make the most sense of all that next-gen sequencing data.
PBAT
Developed in collaboration with Dr. Christoph Lange of Harvard's School of Public Health, Golden Helix PBAT delivers an exclusive and extensive array of advanced statistical routines for the design and analysis of family-based SNP and CNV association studies.
Regression Module
Perform advanced linear and logistic regression, stepwise regression, and permutation tests with numeric variables and recoded genotypes.
SVS Viewer
SVS Viewer makes collaboration easy, and it's completely free. Load projects or individual datasets created by someone with SVS 7. Then you can manipulate spreadsheets, edit node annotations, augment existing plots, or create entirely new ones.
Software Link: SNP & Variation Suite
