OriginPro - Data Analysis Management software

OriginPro offers all of the features of Origin plus extended analysis tools in the following areas:

1. Peak Fitting
2. Surface Fitting
3. Statistics
4. Signal Processing
5. Image Handling

Peak Fitting
The Peak Analyzer tool in OriginPro provides the additional capability of finding and fitting multiple peaks in your spectra. Baseline anchor points can be customized and fit with a suitable fitting function, and the baseline fitting can be included as part of the final peak fitting process. A detailed Fit Control dialog is provided to control all aspects of peak fitting including mixed peak functions, peak centers and widths, sharing parameters, and imposing bounds and linear constraints on parameters. Graphical as well as tabular results are generated as part of the final fit report.

Surface Fitting
OriginPro can fit a 3D surface to XYZ data points. The surface and data points can be displayed together, including droplines from the points to the surface.

Statistics
OriginPro expands on the statistical analysis capabilities of Origin by providing additional tools in Descriptive Statistics, Discrete Frequency counting, normality tests, correlation analysis, one-way and two-way Repeated Measures ANOVA, many nonparametric tests such as Friedman ANOVA and Two-Sample Kolmogorov-Smirnov Test and Mann-Whitney Test, Survival Analysis tools including Weibull Fit and Cox Proprotional Hazard Model, ROC Curves, and Power and Sample Size tests.

Signal Processing
Advanced signal processing features in OriginPro include Short-Time FFT (STFT), Hilbert Transform, Coherence, 2D FFT and 2D FFT-based Filtering, 2D Correlation, and Wavelet analysis.

Image Handling
OriginPro offers more ways to handle your image data, including alpha blending, pixel logic, morphological filtering, and interpolated background subtraction.

Analytical Power
With so much analytical power, OriginPro is the software of choice for those who want a single data analysis and graphing solution.

Software Link: OriginPro - Data Analysis Management software

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UnGraph - Digitizer program

Often you see a graph, chart, picture or drawing and wish you could easily get hold of the X,Y data from which it was drawn. Now, you can scan such material with any scanner or photo- graph it with a digital camera and UnGraph will be able to give you the coordinates with a high degree of precision.

UnGraph is TWAIN compliant, giving the option to scan images directly from within the software. UnGraph can also directly import images in many formats including TIF, PCX, JPG, BMP and TGA. Images can be panned and zoomed to view and vectorize selected portions. Paint, replace and erase tools allow you to modify images at any time.

UnGraph needs you to enter just three calibrating coordinate values in order to scale your image. The calibration system can make allowance for skewing of images. It also handles logarithmic X- and/or Y-scales of graphs. Calibration data can be saved with an image to facilitate subsequent digitizing sessions.

Version 5.0 of UnGraph has an outstanding new user interface with multi-panel screen allowing simultaneous viewing of images, numeric output and, optionally, the context-sensitive Guide which provides continuous hints on how to use the program. Multiple lines can be digitized during a session and color-coding ensures that you know which line corresponds to which dataset. There is an infinite-level Undo and Redo facility.

UnGraph has an extremely powerful automatic line follower (or you can use the mouse to follow a line manually). The line follower can move in either direction in both the X and Y dimension with the result that lines such as map contours or images of cell walls can be digitized. Lines can be of any color and the line-follower will stay on a given color within a user-controlled tolerance range (which allows for color variation in scanned images). To initiate line following you simply position the cursor on the starting point with the mouse and click. UnGraph then invokes its proprietary following algorithm which learns and adjusts to the curve as it goes. The smart gap-jumping and search algorithms follow your line despite imperfections. Settings for the line follower can control its speed and optimize its performance with unusual graph types such as step plots. You can reverse, stepwise, a digitization where the line- follower has inadvertently overshot your desired endpoint.

If you prefer, you can always use manual vectorization for maximum control over digitizing. In this mode, UnGraph allows you to overpaint a selected line and the line-follower then follows the overpaint color.

Multiple lines can be digitized during a session and a color-coding system ensures that you know which line corresponds to which dataset. Images can optionally be saved to include the results of digitizing sessions plus any painting work you have done on them. As well as the automatic line follower there is single-point mode which lets you point and click on any point you wish to digitize. This is suitable for scatter diagrams, histograms and to get height and position coordinates of selected peaks of chromatograms etc.

The X,Y coordinates can be expressed in two forms. By default, the location of every pixel which the line follower passes through is recorded, which allows the program to record sharp changes in line direction better than ever. However the program can also fit a spline model to digitized lines and this gives easy user control over the start value and the intervals between the data output coordinates. The results export module allows numerous formats to be output either as files or via the clipboard. UnGraph optionally lets you format the data output with Header, Body and Footer. This allows for output in specific formats such as XML. Excel (.xls) has been added to the list of output formats in Version 5.0. UnGraph has built-in mathematical functions enabling addition or subtraction of lines and computation of area under the curve (AUC) etc.

Software Link: UnGraph - Digitizer program

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ChemBioViz - visualization and analysis Software

This premier visualization and analysis suite includes ChemBioFinder Ultra 12.0 (with ChemBioViz Pro 12.0), ChemBioDraw Ultra 12.0, ChemBio3D Ultra 12.0, ChemBio3D interfaces to Schrodinger's Jaguar and Gaussian, GAMESS Pro 12.0, ChemDraw/Excel and CombiChem/Excel, STATISTICA Base, MNova Std/Lite, the ChemDraw and Chem3D ActiveX Pro Plugins & Controls, and ChemScript Pro 12.0.

ChemBioViz Ultra 12.0 adds ChemBioFinder Ultra, ChemBioDraw Ultra, ChemBio3D Ultra, ChemBio3D interfaces to Schrodinger's Jaguar and Gaussian, ChemDraw/Excel and CombiChem/Excel, ChemNMR, Name=Struct, ClogP, and ChemScript Pro to ChemBioViz Pro 12.0.

ChemBioViz Ultra 12.0 provides the premier ChemBioOffice 2010 applications in a tightly integrated visualization suite, allowing users to visualize and analyze their structures and data graphically, and identify trends and correlations within subsets of data. Retrieve or search for a set of compounds, choose the data you want to see, whether it is biological test results, physical property values calculated automatically or prices in a catalog, and ChemBioViz will generate an interactive window showing a scatterplot, histogram, or other useful data graphic. Show Property predictions Live-Linked to the structure, Fragmentation tools, 3D structures Live-Linked to the 2D structure and more!

Software Link : ChemBioViz - visualization and analysis Software

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E-WorkBook Suite - Data Management Software

E-WorkBook Suite is a flexible, extensible framework for the capture, analysis, searching and reporting of experimental data in a fully compliant, 21 CFR Part 11 validated environment. The E-WorkBook Suite provides an environment that:
Captures and protects corporate intellectual property and ensures effective data security
Boosts research productivity and efficiency by improving data accessibility, promoting knowledge sharing and reuse of data across an organization, thereby minimizing duplication of work
Is highly adaptable to meet the needs of all researchers, from any research biologist to the medicinal or synthetic chemist
Reduces the burden of paper notebooks/paper trails
GxP and Validation, E-WorkBook Suite fully meets the requirements for GxP and 21 CFR Part 11 by providing administrator definable access control, granular audit trails and electronic signature sign off
E-WorkBook Suite provides a plug-and-play integration with digital signatures and is also certified by SAFE-BioPharma, the industry's signature standards bod.

Software Link: E-WorkBook Suite - Data Management Software 

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IO Informatics - Life science Data Management Software

Today life sciences industries face unprecedented demands to reduce clinical and administrative costs, manage data from myriad sources, and improve team productivity. It is vital to the success of any life-science organization to improve efficiency and cost containment.

Harnessing the explosion of data is a constant challenge for life sciences organizations. In an ever-changing environment, locating and accessing information can consume a vast amount of resources.

"The increasing number of failures in the early stages of drug development is causing a bottleneck that threatens drug makers' efforts to rebuild their inventory of new drugs, according to a top Wyeth official. 'Success rates in Phase II studies have fallen from 40% to 25% in just five years, while the time it takes for the studies to reach their conclusions has doubled to almost three years since 2000.'"

Sentient solutions for life sciences optimize the flow of data, enabling organizations to track life-cycle information from early-stage data acquisition and R&D right through to FDA submission.

"The Sentient Suite expedites our biomarker discovery, creating the ability to raise the visibility of proteins of interest and to find and link them to related information"

Using Sentient software, users can dramatically improve efficiency through integrated data analysis. Users can search, link, correlate, and manipulate data sets, including scientific data, images, databases, spreadsheets, web content, proprietary video, and file formats.

In contrast to most current data integration methods, Sentient solutions minimize disruption of existing infrastructure, use existing infrastructures, and can be installed on standard laptop computers.

Software Link:  IO Informatics - life science Data  Management Software

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IQbase - image organization Tool

IQbase image database will help you to preserve your organization's images and data while using a streamlined workflow that fits your needs.

Manage Your Valuable Image Data
Your organization spends time and money acquiring images. With IQbase, you can easily store and access this image data. Save time, save corporate knowledge, and save money.

Share and Search for Images Online
Share and search for archived images online via the web.

Quickly Find What You are Looking For
Use sophisticated search and query tools to find exactly what you are looking for. Locate images using metadata, keywords and other related information.

Streamline Your Workflow
IQbase offers a flexible interface that lets you archive and access images using techniques that fit your workflow.

Review and Compare Archived Images
Gain a better understanding of your archived images by using the many built-in tools for reviewing and comparing images data.

Report Your Findings
Share your image data using tools that allow you to quickly export to PowerPoint and create template-based reports.

Software Link: IQbase - image organization Tool

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GeneSpring Workgroup - Data Analysis software

Agilent's GeneSpring Workgroup provides a robust data management and analysis environment for GeneSpring data and analysis results. It combines a highly scalable architecture, a rich set of analysis tools, and a series of programmatic interfaces that enable multi-campus enterprises to maximize the value of their research.

Details

Agilent's GeneSpring Workgroup provides a robust data management and analysis environment for GeneSpring data and analysis results. It combines a highly scalable architecture, a rich set of analysis tools, and a series of programmatic interfaces that enable multi-campus enterprises to maximize the value of their research.

Store and protect GeneSpring multi-omics data and analysis results
Publish static images
Secure access to any experimental data
Browser interface to search for available experiments
Web Client to view analysis results
Compatibility with Oracle or MySQL database 

 

Software Link: GeneSpring Workgroup - Data Analysis software 

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GraphPad Prism - Data Analysis Management software

GraphPad Prism is a powerful combination of basic biostatistics, curve fitting and scientific graphing in one comprehensive program. More than 100,000 scientists in over 100 countries rely on Prism to analyze, graph and present their scientific data.

What makes Prism the program of choice for many of the world's leading universities, medical centers, research institutes and pharmaceutical companies? Prism certainly has all the capabilities you would expect from a top notch scientific graphics program, but what makes Prism truly unique is not what it does, but how it does it. Designed for the practical scientist, Prism does not expect you to be a statistician. It guides you through each analysis - giving you as much help as you need - and tracks and organizes your work like no other program available. You can concentrate on your data, not fight with your software.

Software Link : GraphPad Prism - Data Analysis Management software

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Stat-200 - Data Analysis Management software

Stat-200 is a remarkably comprehensive general statistics package. It incorporates all the descriptive statistics, parametric and non-parametric statistical tests, graphics and data transforms you will need for processing, analyzing and presenting data. Parametric tests and procedures in Stat-200 total 60 and there are 66 non-parametric tests and procedures and 30 different descriptive statistics. ANOVA is comprehensive and includes general N factor analysis. Many unusual procedures are included e.g. survival analysis. All tests have associated information windows which give literature references and other facts to assist in getting the right one for the job. Probabilities are calculated directly so there is no need to use tables.

Stat-200 has a state-of-the-art user interface with all its statistical and plotting modules easily selected from the logical tree views. Procedures you use frequently can be placed in a Favorites list for instant access. The workbook is a powerful tool for manipulating and selecting data. It can be any size, limited only by your computer hardware. More than 65 data transforms are supplied and there is a high-level language built-in to enable any transform to be programmed by the user. Data can be keyed-in and also either copied and pasted or dragged and dropped from spreadsheets. In addition, spreadsheet files in many formats can be directly opened. Stat-200 is readily integrated with databases and it supports Recordset tables for ODBC database connections enabling data and results to be easily passed back and forth.

Software LInk : Stat-200 - Data Analysis Management software

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MATLAB - Data Analysis Management software

MATLAB® is a high-level technical computing language and interactive environment for algorithm development, data visualization, data analysis, and numerical computation. Using MATLAB, you can solve technical computing problems faster than with traditional programming languages, such as C, C++, and Fortran.

You can use MATLAB in a wide range of applications, including signal and image processing, communications, control design, test and measurement, financial modeling and analysis, and computational biology. Add-on toolboxes (collections of special-purpose MATLAB functions) extend the MATLAB environment to solve particular classes of problems in these application areas.

MATLAB provides a number of features for documenting and sharing your work. You can integrate your MATLAB code with other languages and applications, and distribute your MATLAB algorithms and applications.

Key Features:

• High-level language for technical computing
• Development environment for managing code, files, and data
• Interactive tools for iterative exploration, design, and problem solving
• Mathematical functions for linear algebra, statistics, Fourier analysis, filtering, optimization, and numerical integration
• 2-D and 3-D graphics functions for visualizing data
• Tools for building custom graphical user interfaces
• Functions for integrating MATLAB based algorithms with external applications and languages, such as C, C++, Fortran, Java, COM, and Microsoft Excel 

Software link : MATLAB - Data Analysis Management software

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GraphPad InStat - Biostatistics Software

Most statistics programs are designed by statisticians, for statisticians. These programs are feature-packed and powerful, but can overwhelm scientists with thick manuals, obscure statistical jargon and high prices. GraphPad InStat is different. InStat is designed by a scientist for scientists.

Five reasons why you should choose InStat:
InStat guides you step by step
InStat conquers the learning curve by escorting you through statistical analyses. You'll master the program in just a few minutes - really.

Clear analysis choices with explanations
You don't have to know the name of the test you need. InStat helps you pick an appropriate test by asking questions about your data. If you are unsure, consult the extensive help screens, which explain the statistical reasoning in plain language.

Easy to understand results
InStat does not assume that you are a statistics whiz. It presents results in simple paragraphs, with a minimum of statistical jargon. InStat's help screens review the use of each test and explain every portion of the results.

Unique analysis checklists
With other statistics software, it is too easy to get the right answer to the wrong question. That's why InStat provides a unique analysis checklist. Double-check that your data have not violated any assumptions of the test, and that you have picked a test that matches your experimental design and really answers the question you had in mind.

A bargain
Most other statistics programs cost several hundred dollars, but we've made InStat affordable for everyone. InStat costs only $149 for single copies and $79 for upgrades. Buy InStat right now.

Software Link: GraphPad InStat -  Biostatistics Software

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FigSys v.2.4 - Data Analysis Management software

FigSys v.2.4 is a program for processing, analyzing and presenting data and creating science documents of all kinds. FigSys is a major advance in Windows graphics software. It is powerful but easily accessible to users of all levels of experience. Turning your data into basic figure types such as line graphs, bar charts, areagrams, drop-plots or scatter diagrams is completely automatic and there are endless refinements which can be added with the simple-to-use tools. Text-only charts can be created and 3D data graphing is also included.

FigSys has advanced spreadsheet and word-processing power and entire reports and posters can be created without using other software. However, the program is easily interfaced with other software and can import and export data and images from/to a variety of sources. Data processing is comprehensive with many transforms and statistics supplied.

FigSys has powerful multivariable equation-fitting which includes a unique genetic algorithm for creating accurate initial parameter estimates. Many standard equations are supplied and you can easily add your own in conventional algebra. There is also a 'freehand' curve facility which enables you to insert smooth graph lines exactly where your eye tells you they should be.

Presentation quality output can be made to all Windows-supported devices such as printers and slide-makers and also to a wide variety of image formats for transfer to word-processors, slide bureaus etc. Template facilities in FigSys let you use a similar design of figure repeatedly with different datasets. Zoom and snap-to-grid features enable precise positioning of all the components in your document. You can reprogram the toolbars to suit your own style of working. The feature-set of FigSys can optionally be controlled by your own scripts.

Software Link: FigSys v.2.4 - Data Analysis  Management software

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