VeraCode Assay Designer software

The VeraCode Assay Designer software streamlines the development of low- to mid-plex genotyping assays using VeraCode Universal Capture Beads. Simply import list of desired targets in FASTA format by dbSNP accession number, or directly insert sequence information and select the design parameters. The software outputs multiple allele-specific primer extension assay designs scored on multiplex compatibility, GC content, melting temperature, likelihood of primer dimmers, and folding. Results are easily exported for straightforward purchasing of consumables and running on the BeadXpress Reader.

VeraCode Assay Designer Highlights
Streamlined Interface: Simply input target sequences and the software automatically designs multiplex assays
Flexible Assay Design: Automatically incorporate capture bead sequence or manually assign bead codes
Customizable Design Parameters: Manually select parameters for increased control, use pre-set criteria, or allow the software to use preset design parameters.

Software Link:  VeraCode Assay Designer software

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SNP & Variation Suite - Genomic software

SNP & Variation Suite is the most powerful and integrated collection of high-performance analytic tools for managing, analyzing, and visualizing large-scale, complex genomic data. It's fast, easy-to-use, and runs on conventional desktop computers enabling you to interact with your data as never before. Both statistically and visually, you can explore the relationships among vast amounts of clinical patient data, environmental factors, and genetic variants to understand the cause of disease and other traits - without writing a single line of code (unless you want to).
Details
YOUR DATA. YOUR ANALYSIS. YOUR DISCOVERY.

SNP & Variation Suite is the most powerful and integrated collection of high-performance analytic tools for managing, analyzing, and visualizing large-scale, complex genomic data. It's fast, easy-to-use, and runs on conventional desktop computers enabling you to interact with your data as never before. Both statistically and visually, you can explore the relationships among vast amounts of clinical patient data, environmental factors, and genetic variants to understand the cause of disease and other traits - without writing a single line of code (unless you want to).

ANALYTIC SOLUTIONS

SNP Analysis
Get the most out of your microarray data with the most complete set of SNP analysis tools.

Genome-Wide Association
Take GWAS to a new level with unparalleled performance on large-scale data.

Next-Generation Sequencing Analysis
Latest tertiary analysis methods for DNA
next-generation sequencing.

Copy Number Analysis
Optimal results with a complete set of quality assurance, CNV detection, and analysis tools.

LD and Haplotype Analysis
Powerful new plotting and analytics for linkage disequilibrium and haplotypes.

Family-Based Analysis
Cutting-edge analytics for virtually any family study design and ascertainment condition.

Data Management
Easily manage data of any size and type on a conventional desktop computer.

Data Editing and Enrichment
Real-time data editing, manipulation, and enrichment on large-scale data.

Quality Assurance
A robust toolset for quickly assessing and remedying sample and marker issues.

Genome Browser and Visualization
Explore data and results with unprecedented whole genome navigation and visualization.

Scripting and Integration
Innovate, integrate, and automate with a fully-programmatic Python scripting interface.

Runs of Homozygosity Analysis
Identify patterns of extended homozygosity and run statistical tests for association.

SVS MODULES

HelixTree
HelixTree is the core module of the SNP & Variation Suite. Its unique set of conventional and leading edge analytic tools empower you to quickly and easily perform a broad array of workflows for genetic association studies.

CNAM
CNAM, in conjunction with other SVS 7 modules, offers a complete set of tools for processing raw intensity data, identifying regions of copy number variation (CNV), visualizing copy number data, and performing association analysis on a variety of copy number covariates.

Whole Genome Analysis Module
The Whole Genome Analysis Module incorporates several technologies and methods designed to overcome the statistical and computational challenges of large-scale whole genome analysis.

Sequence Analysis Module
Rare variants require new methods that don't work in traditional common variant studies. With the introduction of an entirely new Sequence Analysis Module you now have access to the latest tertiary analysis methods to help you make the most sense of all that next-gen sequencing data.

PBAT
Developed in collaboration with Dr. Christoph Lange of Harvard's School of Public Health, Golden Helix PBAT delivers an exclusive and extensive array of advanced statistical routines for the design and analysis of family-based SNP and CNV association studies.

Regression Module
Perform advanced linear and logistic regression, stepwise regression, and permutation tests with numeric variables and recoded genotypes.

SVS Viewer
SVS Viewer makes collaboration easy, and it's completely free. Load projects or individual datasets created by someone with SVS 7. Then you can manipulate spreadsheets, edit node annotations, augment existing plots, or create entirely new ones.



Software Link: SNP & Variation Suite

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GenomeQuest - Sequence data management (SDM) platform

At the core of GenomeQuest is the GQ-Engine - a database engine that is purpose-built for storing, managing, and analyzing sequence data at NGS scale.

GenomeQuest is the world's leading sequence data management (SDM) platform. Researchers use state-of-the-art tools to store, manage, and analyze genomic data. Bioinformatics teams get a development platform to customize workflows, build applications, and unify their sequence data environment. IT and business managers can efficiently scale to NGS across discovery operations.

Science Applications
GenomeQuest provides cutting-edge computational, querying, and visualization tools along with applications that accelerate research and discovery.

Built-In Collaboration
A web-based dashboard offers easy access to everything your team needs - including compute resources, sequence datasets, and discovery tools.

High Performance Infrastructure
GenomeQuest is purpose-built for large-scale sequence data management and analysis, utilizing cloud-based, embarassingly parallel" computing.

Unified Database for all Sequence Data
Sequences

Software Link: GenomeQuest

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Sequencher 5.0 - DNA sequence data anaylsing Software

Sequencher 5.0 from Gene Codes Corporation takes you from DNA sequence data to results easier and faster than ever! Over 20 years of daily use by biologists in labs around the world have refined Sequencher's tools and interface. You get the power and speed to get accurate results from your DNA analysis, and get back in the lab more quickly. Whether you need DNA sequence assembly and analysis tools for next-generation or traditional (Sanger or Capillary Electrophoresis) DNA data sets, Sequencher 5.0 will guide you toward results.

Next-generation DNA data sets:

• Maq and GSNAP alignment algorithms
• SNP analysis and methylation studies
• Tablet Viewer

Traditional DNA data sets:

• Multiple, configurable DNA Assembly algorithms
• Comprehensive DNA sequence editing tools
• Full support of sequence data confidence values

Next-generation or Traditional DNA data analysis features:

• Powerful reference sequence alignment
• Variance Table to discover SNPs quickly and easily
• Extensive data import and export capabilities
• NCBI BLAST search
• Forensic mtDNA profiling

Software Link:  Sequencher 5.0

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DNAnexus - Sequence Data analysing software

DNAnexus provides solutions for both DNA sequencing centers growing their next-gen capacity, and researchers working with next-gen sequence data. Our web-based platform solves the data management and analysis challenges common to both with a single, unified system.

DNAnexus is built from the ground up to run on Amazon Web Services, the world's leading cloud computing provider. Our solution delivers not just software, but also all the computing and storage infrastructure. 100,000s of CPUs and 100s of petabytes of storage are available to you through DNAnexus, which acquires those resources on demand, allowing our pricing to mirror your usage. We support sequencing operations and research organizations of virtually any size, with absolutely no upfront hardware investment needed.

For core facilities with one instrument or sequence centers with 100 instruments, you can connect your sequencing output to DNAnexus in as little as 10 minutes. Learn more about what DNAnexus can do for your next-gen data management.

For researchers with a single lane of data, or for large commercial life science research organizations, DNAnexus can give you the right tools for your work, and the ability to scale up your research instantly in the future. Get started immediately without any setup or configuration.

Software Link: DNAnexus - Sequence Data analysis

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CLC Science Server

CLC Science Server is an advanced Next Generation Sequencing focused three- tier solution offering secure, powerful, and flexible bioinformatics computing on a server located centrally in your organization.

Details
An advanced & powerful three-tier solution

CLC Science Server is an advanced Next Generation Sequencing focused three- tier solution offering secure, powerful, and flexible bioinformatics computing on a server located centrally in your organization.

The three main components are:

CLC bio offers installation, customization, and integration
Server software running on all major platforms (Windows, Mac OS X, and Linux)
Database backend: Either your existing database(s) or CLC Bioinformatics Database (Microsoft SQL Server 2003 & 2008, Oracle, mySQL, PostgreSQL, or H2)
Client software: Any CLC Workbench, any Web browser, and any custom developed clients can access the server concurrently

Among others, CLC Science Server provides you:
A powerful and modern three-tier server architecture
Flexible options of executing centralized services
Easy integration with other applications and services
Powerful database communication and data integration
Secure access control framework and central action logging

Software Link: CLC Science Server

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CLC Assembly Cell - Genomics Software

CLC Assembly Cell is a high-performance computing solution for read mapping and de novo assembling of Next Generation Sequencing data.

Details
CLC Assembly Cell is a high-performance computing solution for read mapping and de novo assembling of Next Generation Sequencing data.

The command-line interface of CLC Assembly Cell enables the functionalities to be easily included in scripts and other Next Generation Sequencing work-flows.

CLC Assembly Cell is utilizing SIMD instructions to parallelize and accelerate the assembly algorithms, making the program the fastest Next Generation Sequencing assembler at present.

The main functionalities of CLC Assembly Cell are:

Read mapping
Read mapping of Illumina Genome Analyzer, SOLiD, and 454 sequencing data
Support for native Color Space assembly
Support for both short read and long read assembly, including 454/Titanium data
Support for both gapped and ungapped alignments when doing short read assemblies
Support for assembly of paired end reads

De novo assembly
De novo assembly of Illumina Genome Analyzer and 454 sequencing data
Support for both short read and long read assembly, including 454/Titanium
Support for de novo assembly of paired end data

Other analyses
Fast analysis of raw data, including reporting
Option of joining data from different sources into the same analysis (including data generated by different kinds of sequencing technologies)
Extraction of data from part(s) of an assembly. Examples are extraction of contig and reads from an area of interest, or extraction (exclusion) of data from a specific sequencing lane that is suspected not to be of acceptable quality.
Find variations (simple SNP detection)
Support for input file formats Fasta, Sff, GenBank, csfasta, and scarf
A number of output options, including tables with assembly info
A "graphical" (ASCII art :-)) assembly viewer to get quick overview
Full integration with CLC Genomics Workbench. Output data from CLC Assembly Cell can be imported and further analyzed in CLC Genomics Workbench.

Software Link: CLC Assembly Cell

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CLC Genomics Machine - Genomic Software

CLC Genomics Machine is a turnkey solution including a lightning fast hardware platform with pre-installed enterprise software focusing on High-Throughput Sequencing data analysis - ready to function straight out of the box.
Details
Turnkey solution for large full-genome analyses

CLC Genomics Machine is a turnkey solution including a lightning fast hardware platform with pre-installed enterprise software focusing on High-Throughput Sequencing data analysis - ready to function straight out of the box. In addition, CLC Genomics Machine comes with several CLC Genomics Workbenches for user-friendly NGS data analysis on your own desktop.

Features
CLC Genomics Machine is a turnkey solution providing your organization with a wide range of High-Throughput Sequencing data analysis tools. Some are shown below:

Genomics
Read mapping of Sanger, 454, Illumina Genome Analyzer and SOLiD sequencing data
De novo assembly of genomes of any size (only limited by RAM available)
Color space mapping
Advanced visualization, scrolling, and zooming tools
SNP detection using advanced quality filtering
Support for multiplexing with DNA barcoding

Transcriptomics
RNA-seq including support for paired data and transcript-level expression
Small RNA analysis
Expression profiling by tags
EST library construction
Advanced visualization, scrolling, and zooming tools
Gene expression analysis

Epigenomics
Chromatin immunoprecipitation sequencing (ChIP-seq) analysis
Peak finding and peak refinement
Graph and table of background distribution and false discovery rate
Peak table and annotations


Software Link: CLC Genomics Machine

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CLC Genomics Server

CLC Genomics Server is an advanced High-Throughput Sequencing focused three-tier solution offering secure, powerful, and flexible bioinformatics computing on a server-architecture located centrally in your organization.
Details
Centralized Bioinformatics Analyses

CLC Genomics Server is an advanced High-Throughput Sequencing focused three-tier solution offering secure, powerful, and flexible bioinformatics computing on a server-architecture located centrally in your organization.

Available bioinformatics analyses
Read mapping of Sanger and High-Throughput Sequencing data
De novo assembly of Sanger and High-Throughput Sequencing data
SNP detection on whole genomes of any size
DIP detection on whole genomes of any size
ChIP-seq analysis
RNA-seq analysis
Small RNA analysis
Trim Sequences

Main reasons to invest in CLC Genomics Server
Compute Resource Management:
Central execution platform with flexible queuing system, designed for your bioinformatics analysis and services.
Flexible:
Based on a 3 tier system architecture to offer maximum security and intractability within fields of biology and bioinformatic computing.
Premium System-Clients:
Offers maximum client-flexibility with support for our user-friendly and award winning CLC Genomics Workbench as a premium system-client.
Customizable:
Highly customizable on both client-side and server-side using our SDK or various Command Line Tools.
Scalable:
Highly scalable with support for CLC Server Nodes.
Advanced Data I/O:
Offers an advanced and customizable data-import/export framework, that also can be used for data conversion.
Shared Data:
Store your data on central storage. This can be either a File System, the CLC Bioinformatics Database or on a custom designed database scheme.

Design custom workflows to support your science
With the Command Line Tools of the CLC Genomics Server, it is possible to define your own workflows. This is done in terms of scripts that interact with the CLC Command Line Tools. With the solution a sample script workflow is given, that imports NGS reads, maps the reads to a reference, followed by SNP and DIP detection:

Software Link:  CLC Genomics Server

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CLC Genomics Workbench

We have overcome the challenge to analyze High-Throughput Sequencing data faster than it is produced by implementing a SIMD-accelerated assembly algorithm in our Next Generation Sequencing solution, CLC Genomics Workbench - a cross-platform desktop application with a graphical user-interface.
Details
Dominating the High-Throughput Sequencing data analysis challenge

We have overcome the challenge to analyze High-Throughput Sequencing data faster than it is produced by implementing a SIMD-accelerated assembly algorithm in our Next Generation Sequencing solution, CLC Genomics Workbench - a cross-platform desktop application with a graphical user-interface.
CLC Genomics Workbench, for analyzing and visualizing Next Generation Sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow.

Some of the key Next Gen Sequencing applications of CLC Genomics Workbench are listed below

Genomics
Read mapping of Sanger, 454, Illumina Genome Analyzer and SOLiD sequencing data
De novo assembly of genomes of any size (only limited by RAM available)
Color space mapping
Advanced visualization, scrolling, and zooming tools
SNP detection using advanced quality filtering
Support for multiplexing with DNA barcoding

Transcriptomics
RNA-seq including support for paired data and transcript-level expression
Small RNA analysis
Expression profiling by tags
EST library construction
Advanced visualization, scrolling, and zooming tools
Gene expression analysis

Epigenomics
Chromatin immunoprecipitation sequencing (ChIP-seq) analysis
Peak finding and peak refinement
Graph and table of background distribution and false discovery rate
Peak table and annotations

Cross-platform
CLC Genomics Workbench is available for Windows, Mac OS X, and Linux platforms, and includes all features of CLC Main Workbench for carrying out a wide range of downstream analyses.

Benchmarking
In benchmark tests we have assembled half a million 454 reads against the full E. coli reference genome in around 2 minutes on a two-core laptop with 2 gigabyte RAM. This speed-up, based on integrated SIMD high-performance computing technology, increases even more when using a computer with more CPU-cores and RAM.

454, SOLiD, Illumina Genome Analyzer - no problem!
We support all the major Next Generation Sequencing platforms, such as SOLiD, 454, Illumina Genome Analyzer and of course also Sanger. We are working closely together with all the instrument vendors to ensure full integration in the ongoing development.







Software Link: CLC Genomics Workbench

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SeqAssem - Contig Sequence Assembly Software

SeqAssem -  Contig Sequence Assembly Software

Features:

• View, edit and proofread DNA sequences and on-the-fly assembly of partial sequences into contigs
• Imports files of the following formats: SCF 2.0, 3.0, ABI, AB1, FASTA.
• Saves all information in small project files.
• Shows estimation of total sequence quality (bad, intermediate, good).
• Sorts sequences by quality, contig number, file name, ... or just arrange sequences by drag & drop.
• Edit bases and compare with their peaks in the electropherograms.
• Original trace data files are not altered.
• Small-sized project files: electropherogram data is excluded from project files.
• Restore original sequences by a single mouse click!

Software Link:  SeqAssem -  Contig Sequence Assembly Software

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Genomic Software - Gapped SOLiD alignment analysis

The Omixon Gapped SOLiD Alignment plug-ins contain sequencer specific, highly accurate algorithms for reference based mapping, alignment and analysis. The Gapped SOLiD Alignment server and workbench plug-ins are intended for the analysis of color space data produced by Life Technologies SOLiD sequencers. Omixon plug-ins are designed to work with other high-throughput sequencing tools within the CLC Genomics Workbench.

Omixon offers a Gapped SOLiD Alignment plug-in for the CLC Bio Genomics Workbench and for the CLC Bio Genomics Server. The plug-ins provide Omixon's accurate SOLiD short read mapping and alignment expertise via the CLC bio platform.

User benefits
• Highest possible accuracy for short read NGS analysis.
• The lowest amount of unmapped or incorrectly mapped reads. Less wasted sequences and wasted consumables.
• Find more variants than your competitors from the same run.
• Automatic handling of lower quality bases without dismissing entire short reads or trimming.
• No need to run pre-filtering tools. Automatic re-calibration of quality scores is part of the alignment.
• No need to run post-alignment tools such as variant equivalents since these are automatically handled at alignment level.
• No need to learn a range of parameters. Most parameterization is handled automatically. The user needs to select sensitivity, maximum mismatches and gaps.
• High performance: save on computing resources since this analysis is faster than the Smith-Waterman based short read aligners.

Gapped SOLiD Alignment
The Omixon Gapped SOLiD Alignment plug-in is based on the Omixon Color Space Toolkit and the algorithms described in Csuros, Juhos, Berces "Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA" Springer Lecture Notes in Bioinformatics 6293:176-188, 2010. It was designed to analyze short read sequencing data obtained from Life Technologies SOLiD next generation sequencing (NGS) instruments.

In contrast to other short read mapping and alignment tools the Omixon algorithms were designed specifically for a particular sequencer, in this case the Life Technologies SOLiD sequencer and its data error model. The mapping uses a spaced seed technique with greedy extension to find the most likely location of the short reads on the reference. In such an alignment, reads are mapped to approximate genome positions, allowing for a pre-specified bound on sequence divergence that combines nucleotide mismatches, gaps, and sequencing errors. The precise alignment relies on a pair hidden Markov model framework, combining DNA sequence evolution models and sequencing errors (from read quality values).

The Omixon Gapped SOLiD Alignment plug-ins provide the highest accuracy and gives you the best chance to find the diagnostically or biologically important variant you are looking for. This CLC Genomics plug-ins are designed to work with the other High-throughput sequencing tools and plug-ins provided by the Workbench. You can use the SNP and DIP (indel) detection tools of the workbench to call variants from the aligned reads.

Precise Variant Detection
The comprehensive probabilistic model incorporates quality scores from the sequencer, and a DNA mutation model (including G/C content, transitions/transversions, and sequence divergence). This allows for statistical confidence measures with no ad-hoc alignment scoring or thresholds.

Software Link: Genomic Software - Gapped SOLiD alignment analysis

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GeneSifter Analysis Edition - Next Generation Sequencing software

From Data To Results
When using microarray or Next Generation Sequencing (NGS) in genomic research, you need powerful analysis software that helps you quickly visualize the mountain of data and mine it for biological significance.

For over 14 years, GeneSifter has helped establish industry best practices and built those standards into an intuitive, easy to use software. Designed by biologists specifically for biologists, GeneSifter combines both secondary (alignment) and tertiary (experimental) data analysis in one complete package.

Anytime, Anywhere Access
Work from any computer or mobile device with secure web browser access.

Pay As You Go
Pay for only what you use. No hardware, no software, no data storage to buy and maintain. Get value from the first dollar and keep in budget with affordable predictable pricing.

Best Practices and Pipelines
Quickly review alignment, QC statistics, annotation information and easily compare data from multiple samples.

Scalable and Flexible
As analysis demands change in size and different platforms emerge, GeneSifter scales and evolves to support you.

Supports Multiple Appications
Compare sample data across multiple applications including whole transcriptome, small RNA, ChiP-seq, exome and targeted resequencing.

Platform Independent
Supports all microarrays and NGS platforms. Instrument independent data analysis and data shared between multiple users.

Software Link: GeneSifter Analysis Edition - Next Generation Sequencing software

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GelQuest - Software for the analysis of DNA fingerprints

GelQuest is the software of choice for the analysis of DNA fingerprint data and DNA fragment analysis. It works in a fast and efficient way with trace files (FSA files) as well as with gel image files (TIFF, JPG, BMP, etc.) and handles AFLP, t-RFLP, ERIC-PCR, RFLP-PCR or RAPD data.

For a detailed description of GelQuest software visit the features page. Just download a trial version to see how easy it works. The registration process is easy: just click the registration menu and order your license key!

Software Link: GelQuest -  Software for the analysis of DNA fingerprints

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GenoscoreDB - SNP genotyping database and management software

Are you genotyping? Looking for an intelligent Data Management Solution?

GenoscoreDB is the answer: its holistic approach integrates all steps, from the design of your experiments (you can directly import data from dbSNP) to storing, managing and analysing your results. A server version allows to work from several desks and collects all in a central repository.

Software Link:  GenoscoreDB - SNP genotyping database and management software

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Progeny Lab - Genotyping Data Management software

Whether you’re managing whole genome association, targeted genotyping, or linkage studies, Progeny Lab is the ideal lab management software for all of your genetic data. Best of all, you can combine Lab with Progeny Clinical and include all of your phenotypic data in the same database, providing the power to combine both sets of data for the most thorough analysis available.

Support is included for both SNPs and STRs, providing you with the ability to natively import genotype data from such varied platforms as ABI, Affymetrix, Illumina, Sequenom, and others.

Progeny Lab incorporates a variety of error checks and has a number of time saving features streamlining the process of gene discovery.

Software Link:  Progeny Lab - Genotyping Data Management software

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DNA Dragon - DNA Sequence Contig Assembler Software

DNA Dragon Contig Assembler assembles sequences (FASTA, GenBank etc.), trace data (ABI, SCF, AB1), and Illumina and Roche 454 flowgrams into contigs. It is a very fast and accurate DNA sequence assembly software for MS Windows (c) operating systems. The DNA sequences are assembled into contigs and a direct comparision of trace date with nucleotide data is possible. It also allows for proofreading and base editing.

1. Fast and robust assembly machine handles more than 100000 samples from sequence formats (FASTA, GenBank, EMBL, etc.), trace file formats (SCF, ABI, AB1) and next generation sequencing file formats (Illumina, SFF, GFF, ...).
2. Easy to use interface which accelerates the proofreading and the comparison of nucleotides with trace peaks.
3. XML-conform project files containing all necessary data.

Software Link:  DNA Dragon - DNA Sequence Contig Assembler Software

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PersonalGenBank - Local sequence database software

PersonalGenBank is a database software maintaining sequences and sequence information in GenBank-format. Generally, the user downloads a large chunk of sequences from GenBank to the local computer and then imports these sequences into PersonalGenBank.

Sequence entries (the accession number) that are already present in the local PersonalGenBank-database are not imported except if the data deviates from existing data! In this case the old data is not overwritten but a new record is added to the database. The old record is marked as 'obsolete' in a special database field whereas the new record is marked as 'updated' plus a list of the deviating fields. This enables the user to quickly find updated records and to compare changes to previous data.

Import GenBank-formatted files into a database.

• Filtering of incoming data (e.g. sequence motifs, taxonomic groups etc.).
• Searching for records in the database.
• Output the data as GenBank-formatted files.
• Store the search and filter options in profiles. 

Software Link:  PersonalGenBank - Local sequence database software

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GenomeTraveler - Genomics software

GenomeTraveler (GT) is a comprehensive software package for the analysis of whole genomes, which supports mapping of NGS fragments, mutation analysis, feature annotation and more.

Details

Key features of GenomeTraveler:
• Mapping of single- and paired-end fragments
• Contig mapping
• de novo assembly
• Import of mapping/assembling results from SAMtool, SOLiD, Velvet and Phrab
• Profile peak detection
• Mutation and SNP analysis
• Expression analysis
• The alignment viewer includes: search, annotation and comparative genome functions

GenomeTraveler is a program for next generation sequencing data analysis and annotation, which runs on Windows, Mac and Linux. It can handle data from Roche/454 GS FLX, ABI SOLiD and Illumina GA, and provides a graphical interface for smooth viewing and editing of mapping and assembly results.

The software runs on Windows, Mac and Linux and has been developed by in silico biology, Inc., in Yokohama, Japan. (http://www.insilicobiology.jp/en).

A free fully functional trial version, as well as further information, is available on our homepage.

Software Link: GenomeTraveler - Genomics software

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GeneSpring GX - Omics Software

Agilent's GeneSpring GX software provides powerful, accessible statistical tools for fast visualization and analysis of transcriptomics, genomics, proteomics and metabolomics data. Designed specifically for the needs of biologists, GeneSpring GX offers an interactive desktop computing environment that promotes investigation and enables understanding of microarray data within a biological context.

Details

Agilent's GeneSpring GX software provides powerful, accessible statistical tools for fast visualization and analysis of transcriptomics, genomics, proteomics and metabolomics data. Designed specifically for the needs of biologists, GeneSpring GX offers an interactive desktop computing environment that promotes investigation and enables understanding of microarray data within a biological context.

New integration with Agilent's Mass Profiler Professional (MPP) software for mass-spectrometry based proteomics and metabolomics data
New application for Agilent's SureSprint G3 Exon Microarray platform for gene and exon-level analysis
New support for Windows 7 32 and 64 bit operating systems
New visualizations and analytical functions
New backup and restore capabilities
Analyze transcriptomics data to detect alternative splicing events, identify differentially expressed genes and microRNAs 

 

Software Link : GeneSpring GX - Omics Software 

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