Life Science Software

Showing posts with label Next generation sequencing software. Show all posts

GenomeQuest - Sequence data management (SDM) platform

At the core of GenomeQuest is the GQ-Engine - a database engine that is purpose-built for storing, managing, and analyzing sequence data at NGS scale.

GenomeQuest is the world's leading sequence data management (SDM) platform. Researchers use state-of-the-art tools to store, manage, and analyze genomic data. Bioinformatics teams get a development platform to customize workflows, build applications, and unify their sequence data environment. IT and business managers can efficiently scale to NGS across discovery operations.

Science Applications
GenomeQuest provides cutting-edge computational, querying, and visualization tools along with applications that accelerate research and discovery.

Built-In Collaboration
A web-based dashboard offers easy access to everything your team needs - including compute resources, sequence datasets, and discovery tools.

High Performance Infrastructure
GenomeQuest is purpose-built for large-scale sequence data management and analysis, utilizing cloud-based, embarassingly parallel" computing.

Unified Database for all Sequence Data
Sequences

Software Link: GenomeQuest

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Sequencher 5.0 from Gene Codes Corporation takes you from DNA sequence data to results easier and faster than ever! Over 20 years of daily use by biologists in labs around the world have refined Sequencher's tools and interface. You get the power and speed to get accurate results from your DNA analysis, and get back in the lab more quickly. Whether you need DNA sequence assembly and analysis tools for next-generation or traditional (Sanger or Capillary Electrophoresis) DNA data sets, Sequencher 5.0 will guide you toward results.

Next-generation DNA data sets:

Maq and GSNAP alignment algorithms
SNP analysis and methylation studies
Tablet Viewer

Traditional DNA data sets:

Multiple, configurable DNA Assembly algorithms
Comprehensive DNA sequence editing tools
Full support of sequence data confidence values

Next-generation or Traditional DNA data analysis features:

Powerful reference sequence alignment
Variance Table to discover SNPs quickly and easily
Extensive data import and export capabilities
NCBI BLAST search
Forensic mtDNA profiling

Software Link: Sequencher 5.0

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DNAnexus provides solutions for both DNA sequencing centers growing their next-gen capacity, and researchers working with next-gen sequence data. Our web-based platform solves the data management and analysis challenges common to both with a single, unified system.

DNAnexus is built from the ground up to run on Amazon Web Services, the world's leading cloud computing provider. Our solution delivers not just software, but also all the computing and storage infrastructure. 100,000s of CPUs and 100s of petabytes of storage are available to you through DNAnexus, which acquires those resources on demand, allowing our pricing to mirror your usage. We support sequencing operations and research organizations of virtually any size, with absolutely no upfront hardware investment needed.

For core facilities with one instrument or sequence centers with 100 instruments, you can connect your sequencing output to DNAnexus in as little as 10 minutes. Learn more about what DNAnexus can do for your next-gen data management.

For researchers with a single lane of data, or for large commercial life science research organizations, DNAnexus can give you the right tools for your work, and the ability to scale up your research instantly in the future. Get started immediately without any setup or configuration.

Software Link: DNAnexus - Sequence Data analysis

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From Data To Results
When using microarray or Next Generation Sequencing (NGS) in genomic research, you need powerful analysis software that helps you quickly visualize the mountain of data and mine it for biological significance.

For over 14 years, GeneSifter has helped establish industry best practices and built those standards into an intuitive, easy to use software. Designed by biologists specifically for biologists, GeneSifter combines both secondary (alignment) and tertiary (experimental) data analysis in one complete package.

Anytime, Anywhere Access
Work from any computer or mobile device with secure web browser access.

Pay As You Go
Pay for only what you use. No hardware, no software, no data storage to buy and maintain. Get value from the first dollar and keep in budget with affordable predictable pricing.

Best Practices and Pipelines
Quickly review alignment, QC statistics, annotation information and easily compare data from multiple samples.

Scalable and Flexible
As analysis demands change in size and different platforms emerge, GeneSifter scales and evolves to support you.

Supports Multiple Appications
Compare sample data across multiple applications including whole transcriptome, small RNA, ChiP-seq, exome and targeted resequencing.

Platform Independent
Supports all microarrays and NGS platforms. Instrument independent data analysis and data shared between multiple users.

Software Link: GeneSifter Analysis Edition - Next Generation Sequencing software

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Next generation sequencing researchers require accurate results, fast. ZOOM exceeds these needs. Using ZOOM, zillions of short reads are mapped back to reference genomes, including post-analysis at unparalleled in speed, at full sensitivity. For unconvinced until truly relevant results are presented, ZOOM offers a free 30-day licenses to process private and public data from Illumina/SOLiD instruments.

As the quantity of data produced by next generation sequencers compounds, software must meet the challenging task on limited resources.

SPEED: A single CPU with only 6.5G of memory is capable of mapping 15x coverage of a human genome in one day using ZOOM at full sensitivity while tolerating two mismatches.

ACCURACY: Using a unique spaced seed strategy, specially extended for short read mapping problems, guarantees 100% sensitivity for a wide range of read length and mismatches. Benchmark testing displays proven accuracy with the presence of insertions and deletions.

SCALABILITY. Whether running ZOOM on a single computer or a server, users can configure ZOOM meets either requirement. This offers an ideal solution to extremely large files as they can even be divided and scheduled to process across multiple computers and multiple CPUs automatically.

ELIMINATE FALSE POSITIVES. ZOOM increases uniquely mapped reads with quality scores and paired end statistics. This reduces the ambiguity of read mapping and increase the accurate identification.

Software Link : ZOOM - Next generation sequencing software