Showing posts with label Pathway Analysis Software. Show all posts
Showing posts with label Pathway Analysis Software. Show all posts

BioDraw - Software to Draw Biological Pathways

BioDraw is a desktop application for drawing, sharing, and presenting biological pathways. BioDraw makes it easy to draw biological pathways. Common pathway elements (membranes, DNA, enzymes, receptors, reaction arrows, etc.) are built in, and other elements may be imported. The pathways you create with BioDraw can be exported for use in presentations, grant proposals, and publications.

Software Link : BioDraw - Software to Draw Biological Pathways
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IPA - Pathway Analysis Software

IPA is software that helps researchers model, analyze, and understand the complex biological and chemical systems at the core of life science research. IPA has been broadly adopted by the life science research community and is cited in thousands of peer-reviewed journal articles.

IPA helps you understand biology at multiple levels by integrating data from a variety of experimental platforms and providing insight into the molecular and chemical interactions, cellular phenotypes, and disease processes of your system. Even if you don't have experimental data, you can use IPA to intelligently search the Ingenuity®Knowledge Base for information on genes, proteins, chemicals, drugs, and molecular relationships to build biological models or get up to speed in a relevant area of research. IPA provides the right biological context to facilitate informed decision-making, advance research project design, and generate new testable hypotheses.

Quickly analyze your experimental data to identify key insights

  • Unlock the insights buried in your experimental data (gene expression, RNA-Seq, microRNA, mRNA, qPCR, proteomics, metabolomics, genotyping) by quickly identifying relationships, mechanisms, functions, and pathways of relevance.
  • Quickly move beyond statistical analysis of high-throughput experimental data to novel biological insights, and the design of validation studies.
  • Utilize powerful biological filters to quickly focus in on the results most relevant to your experimental model or experimental conditions.
  • Easily search the scientific literature and find insights most relevant to your experimental model or question
  • Find information extracted by experts from the full text of the scientific literature, including Findings about genes, drugs, biomarkers, chemicals, cellular and disease processes, and signaling and metabolic pathways.
  • Easily understand and interpret literature information through innovative, customizable, publication-quality graphical layouts that highlight key relationships and novel connections.
  • Have confidence in your hypotheses and conclusions with the support of the unsurpassed accuracy and breadth of biological and chemical Findings in IPA.
  • Build dynamic pathway models to extend your understanding of your research systems
  • Take advantage of the easy-to-use IPA solution to quickly and easily build your own pathway models and analyze your own experimental data.
  • Understand the impact of new published research on your experiments through easy dynamic pathway modeling and frequent content updates.
  • Explore beyond the constraints of "canonical" pathway views with a range of interactive tools for modeling upstream and downstream relationships, shortest path, and other relationships.
  • Constrain the hypothesis space upfront by using contextual data analysis capabilities that create relevant models by narrowing in on pathway members by species, tissue and cell content, or disease.
  • Complete the experiment to experiment workflow by leveraging reagent information within IPA.
  • Share your research and collaborate with your colleagues with the easy-to-use IPA interface
  • Share your customized pathways and analysis results with internal and external collaborators through interactive emails, lists, analysis summaries, and pathways.
  • Share your project space to allow for on-going project collaboration.
  • Create powerful, interactive, custom pathways to clearly represent your experimental models.
  • Generate dynamic reports that describe the broader biological and therapeutic relevance of your pathways or gene lists.
  • Join your peers in using the most highly-referenced pathway solution
  • Join the growing community of thousands of researchers in hundreds of pharmaceutical, biotech, government and academic institutions who use IPA every day to accelerate their research.
  • Publish your research with the support of the most frequently cited pathway solution in the scientific peer-reviewed literature. 
Software Link : IPA - Pathway Analysis Software
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Pathway Studio - Pathway Analysis Software

Pathway Studio pathway analysis software helps you to interpret gene expression and other high throughput data, build, expand and analyze pathways, find relationships among genes, proteins, cell processes and diseases, and draw publication-quality pathway diagrams.
Details
  • Pathway Studio augments your traditional way of working with literature with an immediate automatic access to all published facts in a single database and helps you to:
  • Find major regulators of a disease mechanism, a stress response, or a cell process;
  • Identify the most influential transcription factors or signaling pathways from gene expression data;
  • Compile and visualize a network of protein relations from recently published literature or discoveries in the lab;
And more.

  • You can analyze the following types of experimental data:
  • Gene Expression (Affy, Illumina, Agilent, other platforms);
  • Proteomic, protein IDs and abundance value (Mass Spec, 2D-gel);
  • Lists of proteins, diseases, or small molecules.
  • Pathway Studio comes with a selection of mammalian and other databases. Importantly, you can easily update Ariadne databases from the new PubMed content and experimental data.
Software URL: Pathway Studio - Pathway Analysis Software
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