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Showing posts with label Flow Cytometry software. Show all posts

ModFit LT - Flow Cytometry Software

ModFit LT follows the proud tradition of its predecessors - innovative features and unmatched flexibility to analyze even the most difficult DNA patterns. This is by far the most versatile DNA analysis software we have ever offered, featuring AutoDebris™, AutoAggregates™, AutoLinearity™, and exceptional batch processing. Powerful database support and an intuitive interface make this software a necessity in your laboratory.

ModFit LT is the only software that provides open-ended modeling of flow cytometry histograms. Models for use with cell-tracking dye studies and synchronized cell lines are built right into the software. It is, simply, the industry standard.

Fast, Accurate, Automatic Analysis
Trained on thousands of sample files, ModFit LT features a robust automatic analysis engine. With sophisticated peak detection, the system identifies ploidy patterns and dynamically creates models to match. Improvements like AutoDebris™, AutoAggregate™, and AutoLinearity™ make analysis more robust and consistent from one user to the next. No other cell cycle analysis software comes close!

Cycle Analyzer™
Ploidy determinations are no longer bound to the peak order. Make use of internal standards or an external reference to determine which cycle is classified as Diploid. Any number of cell cycles can be analyzed.

Customized Reports
From letterhead graphics to text, ModFit LT imports from the clipboard everything you need to create your own reusable report templates. Save your custom reports with all the text formatting, analysis information, and even the histogram data.

Stored Comments And Impressions
Create your comments just once and ModFit LT allows you to store them in a quick retrieval database. You provide a convenient description for the comment and ModFit LT does the rest. ModFit LT is what cytometery software should be: simple to use and feature rich.

Database And Graphic Output
ModFit LT allows you to automatically add to a database each time you analyze a data file. Select the items you want to database from an extensive list of results and keywords supported in the sample. Output is in a simple tab delimited format so it can be easily opened by programs like Microsoft Excel and laboratory information systems. Histograms and report graphics can be easily exported in standard graphic formats for use by other programs.

Batch Processing
Process groups of data files with ease using ModFit LT. The batch system automatically loads data, analyzes, and saves reports and graphics. Plus, you can batch process reports for easy review of analysis and printing. Convenient VCR-style buttons make it easy to move through the batch of files or reports.

Software Link: ModFit LT - Flow Cytometry Software

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BD FACSDiva™ software is a collection of rich tools for flow cytometer and application setup, data acquisition, and analysis that help streamline flow cytometry workflow for today's busy laboratory. BD FACSDiva software offers built-in features for consistent and maintainable daily cytometer setup that supports reproducible data acquisition and reliable results.

BD FACSDiva™ software supports data integrity and helps ensure reproducible results by enabling automated cytometer setup.

Cytometer, Application, and Experiment Setup
Automated cytometer setup simplifies cytometer operation and supports reproducible data acquisition. The application settings feature saves settings and applies them automatically, to help keep applications running consistently from day to day. BD FACSDiva software also provides convenient experiment layout tools to simplify creation of analysis templates that can then be saved for future use.

Cytometer Setup and Tracking
A single daily setup run using BD FACSDiva software and BD™ Cytometer Setup and Tracking Beads supports consistency and accuracy of data acquisition. Key cytometer setup values for PMT voltage, laser delay, and area scaling factors are automatically calculated and adjusted to maintain optimal performance levels over time. This automation reduces startup time to approximately five minutes and eliminates multiple error-prone and expensive data acquisitions and calculations. BD FACSDiva software also automatically adjusts application specific cytometer settings over time, eliminating day-to-day manual PMT voltage adjustment.

Cytometer Configuration Setup
BD FACSDiva software provides a graphic of the cytometer's physical optical configuration, showing the layout of detectors, filters, and mirrors. This allows users to select the correct configuration for their work. Administrators can create specialized configurations for particular applications by dragging filters, mirrors, and fluorochromes onto a representation of the optical bench.

Software Link : BD FACSDiva™ software - Flow cytometer data analysis Software

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BD Paint-A-Gate™ Pro software is an interactive and intuitive tool (for research use only) that makes qualitative multiparameter analysis of flow cytometry data straightforward. Now available for Windows® operating systems, BD Paint-A-Gate Pro software uses a combination of color mixing and automated tools to visually capture the complex relationships within data.

Features

Routine steps streamlined for faster analysis
Intuitive interface for pattern recognition in multiparameter flow cytometry
Powerful visualization tools highlight co-expression of markers
Flexible, easy-to-use interface for multiparameter analysis

With BD Paint-A-Gate Pro software, complex relationships between parameters are quickly revealed through the intersection of primary colors (red, green, blue) to form secondary colors (cyan, magenta [violet], yellow, white). The Cell Painting feature allows users to visually identify a group of cells on a dot plot and associate (ie, paint) them with one of the primary colors. Populations in a given plot are painted quickly and easily, using a mouse to draw a lasso around them. The selected cells are then immediately displayed in that color in all plots. Once each population has been painted with a color, the percentage of the total that each population represents is displayed across a color coded status bar at the top of the display.

Enhanced productivity through automated analysis

When the same cell has been painted first with one primary color and then again with a second primary color, it subsequently is displayed in the secondary color resulting from the intersection of those primary colors. For example, dual-positive cells painted with both red and blue are displayed in violet, triple-positive cells painted red, green, and blue are displayed in white. This provides an easy-to-learn, easy-to-use visual framework for data analysis. Various editing features allow users to follow these painting processes in iterative analysis paths through an effectively unlimited number of parameters.

The unique Autopaint feature enables users to set markers on single-parameter histograms to denote positive and negative ranges for up to three parameters. BD Paint-a-Gate Pro software then uses these ranges to automatically paint events in 2D or 3D plots based on those marker settings. This is a quick way to identify single, double, and triple-positive events.

A Paint-A-Gate Set document allows users to save the formats and steps performed during an analysis of a given FCS file and then replay those steps later with different data files from samples stained with the same reagent combination. All painting activities can be stored using the Record Analysis command. To analyze files subsequently acquired with the same reagent protocol, the recorded analysis procedure is played. Paint-a-Gate Set documents can be combined into a batch analysis protocol to automatically analyze and print results, as well as output results to tab-delimited files for spreadsheet input.

Decipher complex data relationships with advanced visualization tools

Powerful visualization tools make it easy to examine and analyze populations that can be difficult to resolve. BD Paint-A-Gate Pro software provides a Transformed SSC feature to scale the SSC axis of plots, enabling clearer visualization of events with lower SSC values. An interactive 3D plot provides the ability to view the data from any angle by simply moving the mouse over the plot. The least populous last (LPL) painting algorithm organizes the displayed populations by the number of cells they each contain, with the population containing the fewest cells in front, progressing to that containing the most cells in the back. This feature ensures that all populations are visible regardless of how few cells exist in them.

Software Link : BD Paint-A-Gate Pro - Flow cytometry data analysis Software

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FCAP Array is a powerful, scientific analysis software designed for Cytometric Bead Array (CBA) data. Two versions of the software, running in Microsoft Windows® and Apple Mac OS® operating systems have been developed.

The software contains tools for all of the jobs you need to easily and efficiently perform CBA data analysis from start to finish. FCAP Array enables laboratories to perform bioassays with an already extensive list of microbead applications far more easily and quickly than with other systems. The software supports the flexible, open-architecture design of most commercially available microbead based technologies. With FCAP Array, these technologies can be configured to perform a wide variety of bioassays quickly and accurately.

The software can read any legal FCS file versions 1 or 2, and it also reads most of the non-standard FCS files, thus supporting the analysis of data acquired on most commercial flow cytometers, including BD FACS Brand instruments, Beckmann Coulter flow cytometery systems, Luminex 100™ and other flow cytometers.

FCAP Array was developed in cooperation with BD Biosciences, San Jose, therefore the software provides special support to coordinate the acquisition of samples with the BD FACSArray bioanalyzer.

Some of the main features of the software:

Multiple Plex Support
Quantitative and Qualitative Analysis
FCS 2.0 and Luminex CSV file import
Experiment and Plex Wizard
Direct Acquisition file export for BD FACSArray BioAnalyzer
Results exportable to MS Excel®

Software Link: FCAP Array - Flow Cytometry Data analysis software

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Cytobank is a platform for managing, sharing and analyzing your flow cytometry data over the web. The software project started as an approach to manage and analyze the large amounts of phospho-flow cytometry data generated in Dr. Garry Nolan's laboratory at Stanford University.

We have made Cytobank available through this website or as a hosted solution via Cytobank Inc. to accommodate interest from the flow cytometry and scientific community.

A key goal at Cytobank is to provide a forum or public resource to share and discuss cytometry experiments. This lowers the barrier of entry into flow cytometry for novice users and users in the computational and statistical domains.

Communicating flow cytometry results is difficult if appropriate experiment details are not provided along with an experiment. In Cytobank, users are already providing these details during the course of analysis and are a few clicks away from sharing these details with collaborators around the globe.

Cytobank fills a key NIH mandate for making published data and results available to the scientific community.

Software link : Cytobank - Flow Cytometry data analysis Software

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FCS Express is the Clinical Flow Cytometry data analysis industry leader. As the only third party data analysis software registered with the FDA for In Vitro Diagnostic use, FCS Express is the tool of choice for the clinical reference lab. FCS Express combines ease of use with a host of features that are critical to the clinical laboratory, both large and small:

Advanced Analysis tools
Sophisticated reporting
Quality Control Alerts
Canned Comments
and much, much more....

Software Link: FCS Express - Clinical Flow Cytometry data analysis Software

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CellCap Analysis Software offers an array of tools for effective data exploration and information presentation, as well as the tools necessary to efficiently manage the data workflow, and ultimately, to share information. All in the familiar Windows-based environment that is both easy-to-use and powerful.

Workflow management
Data management is an important parts of flow cytometry workflow. Fortunately, the CellCap Software offers a complete set of tools to annotate and organize your data.
Easy and clear data management is one of the main principles of CellCap. You are able to find your experiment files from the workspace immediately or with a single click from the database. A clear pop up window helps categorize, export or place your data files under favorites.
Cellcap offers a powerful template system for efficient work. Experiments, sample and tube documents, statistics, calculated parameters and compensation settings can be saved as templates for future use. Sophisticated data management system allows you to set labels for plots and axis at any phase of the analysis.

Share
All core facility managers emphasize the importance of data security , compatibility and easy workflow. Cellcap has been designed to fulfill these requirements.
Data security is ensured through our data vault which allows for multilevel user access. The administrator can set access rights, manage users and set password for them.
Flow cytometry standards have developed significantly over the past decade. We acknowledge the importance of different standard formats and designed CellCap to be compatible with any flow cytometer capable of exporting files in standard FCS 2.0 or FCS 3.0 format.
The powerful network facilities of CellCap enables sharing of experiments, report and data across any network.

Visualization toolbox
Visualizing meaningful questions in multi-dimensional -space requires software tools that present data in a way that supports visual thinking. The perfect presentation makes it easier to organize and understand the information. CellCap Software's Visualization Toolbox provides an array of tools that quickly enable the scientist find critical information, trends, outliers, etc in their data
For better data visualisation, CellCap is equipped with variety of overlays and dot plots . With changes of resultion you can emphasise different clusters in contour plots. The multiple histogram overlay allows you better comparison of clusters.
Time parameter allows analysis of kinetic studies along with providing valuable quality control data on your experiment. Filtering tools simplify focusing on items of interest such as gates, regions and colors.

Data Analysis Toolbox
CellCap provides computational support to augment data visualization/filtering/sorting through the use of tools to help with grouping, aggregating and summarizing data.
The sophisticated statistical analysis toolbox offers multiple analysis methodology. Linear or logaritmic channels can be displayed in same document, plot settings may be duplicated with a single click and flexible statistics windows provides a variety of data display options.
When getting data from sapmles and tubes is not enough to meet your customized analysis needs, CellCap gives you access to personalized analytics through its embedded Calculation Sheet.
CellCap's unique color compensation play back feature provides you a real time feedback on histogram and 2D plot cahnges. You save time and efforts using this vivid mode of compensation. Simple, easy, efficient.

Software Link : CellCap Analysis Software - Flow Cytometry software

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GemStone is a revolutionary new paradigm for analysis of high-dimensional, flow cytometry data. Based on patented Probability State Modeling* technology, GemStone eliminates the problems that have faced flow cytometry analysis for decades, providing a solution that is science-based, data-driven, scalable, and reproducible.

How Does It Work?

An additional parameter based on states and probabilities is defined using our patented Probability State Modeling (PSM) technology. Referred to as State Index, this new parameter is used to parametrically correlate all the other parameters in the system.

Why Is It Better?

Subjective gating and associated errors are eliminated. Population overlaps in multidimensional data are accounted for. Data defined by numerous correlated parameters are presented in simple-to-understand graphics. Multiple samples may be combined into one coherent analysis.

What Assays Can I Use It For?

GemStone is a very versatile application. It is exceptional for analyzing cell progressions, like B cell analysis and T cell activation, and understanding the diseases associated with them. But that's not all it can do with your flow data. GemStone has been used for fetomaternal hemorrhage (FMH), paroxysmal nocturnal hemoglobinuria (PNH), and CD34 stem cell enumeration assays. In these assays, GemStone's ability to identify subsets automatically without the use of gating has proven highly accurate and reproducible.

What Cool Features Does It Have?

State vector arrows and animations let you understand your data like never before. Data zooming, a powerful macro language, a batch system with a built-in database, and common parameter mapping are just a few of the many new innovative features.

GemStone's Heatmap ™ graphics allow you to explore rare events and abnormalities that you have never seen before. The Heatmap tool identifies the low-frequency populations in a sample, and highlights the characteristics in all measurement parameters.

TriCom ™ is another innovative tool for understanding abnormal cell populations. With TriCom, you can identify and quantify each phenotype and the degree of abnormality. Focus your attention on the cells you are really interested in - the abnormal cells - with TriCom.

Software Link: GemStone - Flow Cytometry software

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FCS Express 4 Plus combines all the features of FCS Express 4 Flow Cytometry and FCS Express 4 Image Cytometry in a single package at a discounted price. You can analyze data from listmode files from any flow cytometer and perform sophisticated data analysis on your Image Cytometry data.

Detailed Pricing

$4,225 for academic users $6,500 for commercial users Price does not include the cost of add-ons.

Software Link : FCS Express 4 Plus - Flow Cytometry analysis software

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FCS Express works hard to turn your data into results, so you don't have to. FCS Express can rapidly analyze vast amounts of data, with industry leading flow cytometry tools, but we recognize that is only the beginning of the scientific journey. After the basic analysis is complete, you must compile spreadsheets comparing your data to previous experiments, create bar charts and scatter plots to show these differences and create presentations to show your work to others. FCS Express seamlessly takes you from your primary listmode data files to flexible overviews of your entire experiment.

Easy to use and learn
FCS Express follows the standards set by common Microsoft Office™ Products, particularly Powerpoint ™. If you know how to use Office, you are well on your way to being an FCS Express expert. With the same shortcuts, icons, organization and workflow, you will be analyzing your data quickly and efficiently in minutes.

Reporting
FCS Express boasts a full suite of reporting tools to allow you to easily share your analysis and export to other formats. Our sophisticated, Powerpoint style user-interface lets you create brilliant and informative reports quickly and easily. You can easily batch process through hundreds of data files and export your reports to PDF, Powerpoint, Excel, Word and Text files. You can also export high resolution graphics (DPI only limited by computer memory) of your plots in a wide variety of graphic formats (BMP, EMF, JPEG, TIFF, PNG, GIF).

Software Link: FCS Express - FACS data analysis Software

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WinList - cytometry software designed to be both powerful and easy-to-use. WinList 7.0 raises the bar for flow cytometry data analysis, offering better performance, fabulous 3D graphics, and validated accuracy.

Load FCS files from today's most popular instruments and do your FACS data analysis with a full set of region tools and gates. Easily design professional reports that update automatically. Create ratio parameters and user-defined equations, and apply fluorescence compensation to extend your analysis capabilities. Immunophenotyping, histogram subtractions, leukemia-lymphoma analysis, rare-event analysis, color gating - it's all possible with WinList.

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