softWoRx® Suite 2.0 - Imaging and microscopy software

softWoRx® Suite 2.0 is an advanced visualization and analysis software which combines image viewing, processing and analysis tools with data management software in an easy-to-use format. It now includes support for 64-bit multi-threaded constrained iterative deconvolution.

Compatible with Windows 7.

Product Features:
Integrated image viewer and browser with real-time image preview, channel select, Z and time control, on-screen channel, z and time annotations, scaling tool with histogram, channel color tool, 4D measurement and animation tools, data inspection, ROI, image "send to", export and print functions as well as FTP and secure FTP support.
Deconvolution with image correction featuring the industry acclaimed constrained iterative 3D image restoration and image correction. This quantitatively validated deconvolution solution generates the most accurate measure of sample fluorescence available.
File browser with FTP, DMS
Custom batch mode operations

Optional tools (powered by Bitplane):
Image visualization and analysis with real-time display with slicer, multi-plane sectioning and multi-processing standard shadow projection, Image processing with baseline correction, noise removal, 3D image rotation, emission attenuation and cross-talk correction, 3D visualization with real-time 3D and high-resolution visualization, maximum intensity projection, arbitrary lighting and shadowing, animation editor, measurement tools with Free points, OrthoSlice points and IsoSurface Points, intensity measurements, intensity thresholding and manual object segmentation and image output and management using standard .tif format, QuickTime and AVI.
The "advanced option" for softWoRx Suite includes a complete colocalization analysis package and 4D particle tracking functionality, all seamlessly integrated into the visualization package. Colocalization is an essential element to easily isolate, visualize, and quantify regional overlap in 3D and 4D images with results presented in two ways, a new 3D or 4D channel as well as a statistical report. Particle tracking provides a wide range of 3D and 4D visualization capabilities, as well as image editing and processing functions. Save time on your research by automatically identifying and tracking large numbers of objects, documenting spatial and temporal changes and understanding motion and changes of shape, volume and intensity.

Software Link : softWoRx® Suite 2.0 - Imaging and microscopy software

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softWoRx - Imaging and microscopy software

softWoRx® 5.0 is the latest in DeltaVision image acquisition software. Find samples, acquire images and process data quickly and efficiently with the intuitive user interface. softWoRx 5.0 includes visualization and measurement tools and exports data in a wide variety of formats making it a versatile tool for more than just image acquisition.

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BD Pathway - Imaging and microscopy software

The BD Pathway™ integrated software suite performs high-content cellular analysis from image acquisition and analysis to data analysis and visualization. The software is designed to accommodate different workflows from simple pushbutton control of predefined applications to advanced assay development.

Software for a full range of bioimaging users and applications

The BD Pathway™ software suite is ideal for high-content cellular analysis and accommodates a full range of bioimaging applications. It provides extensive acquisition, image analysis, data management, and query capabilities to suit the needs of all users, from beginners to advanced HCA professionals.

The BD Pathway software suite provides a complete solution, from image acquisition and analysis to data analysis, visualization, and data management. A comprehensive solution for high-content analysis, the suite allows you to run most HCA applications without the need to purchase additional software. The software suite is both powerful and flexible, delivering a variety of analysis tools. It supports standard unencrypted 16-bit TIF and BMP file formats and exports delimited text files, allowing migration of data to third-party software. The BD Pathway™ 855 platform enables the software to run a number of dynamic live-cell applications including calcium flux and other time-lapse imaging experiments.

Easy setup and acquisition

For routine analysis, predefined applications are set up by researchers and stored in the system for easy access with a single click. The Assay Launch dialog allows users to quickly select a routine application, enter the wells of the plate to be analyzed, and run the assay.

Imaging of live cell dynamics

The BD Pathway™ 855 system supports a variety of live cell imaging applications such as calcium kinetics using single- or dual-wavelength dyes. With the included liquid handling capability, compound additions can be coordinated with imaging to ensure analysis of events in real time.

Data management for high-content analysis

BD Biosciences offers key features to effectively manage data generated by BD Pathway™ high-content bioimagers. High-content applications typically generate enormous amounts of image and analysis data. It is crucial for users to manage and query this data effectively. BD AttoVision™ software data management works seamlessly with an SQL-based server so that researchers achieve and maintain increased expertise from their experiments.

Advanced capabilities for image montage and 3D visualization

BD Pathway™ 435 and 855 hardware-enabled features, such as high-precision x,y,z linear-motor positioning, allow the software to deliver precise image montage (tiling) without the need for processing known as stitching." The hardware and software also work together in confocal Z Stack acquisition to allow out-of-focus haze to be removed for improved image quality and analysis."

Detailed Pricing

$17,500 for commercial users $12,500 for academic users 

 

Software Link : BD Pathway - Imaging and microscopy software

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Imaris - Imaging and microscopy software

Imaris is Bitplane's core scientific software module that delivers all the necessary functionality for data visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets. Combining speed, precision and ease-of-use, Imaris provides a complete set of features for working with three- and four-dimensional multi-channel images of any size, from a few megabytes to multiple gigabytes in size. Conveniently load, process and visualize data and images acquired from almost any confocal and wide field microscope to gain new and groundbreaking insight from your image data.

Imaris allows visualization of original and derived data objects in a real time interactive manner so you can quickly make visual assessments of your experiments in 3D and 4D to discover relationships that are otherwise hidden. Its rendering quality, speed, precision and interactivity are unrivalled. With a large variety of segmentation options, Imaris provides you with the most effective tools to segment even the toughest datasets to identify, separate, and visualize individual objects and then utilize the Imaris MeasurementPro module to pull out the statistics.

Imaris includes features to communicate and share results convincingly: The "Snapshot" command is a convenient way to export any image view in a standard format that can be used for presentations and publications. The highly advanced Key Frame Animator" allows intuitive creation of even the most complex movie from 3D and 4D scenes and allows those movies to be saved as a QuickTime or AVI file. The option to generate a QuickTime VR movie is also provided. No other software gives you so much control at so many levels.

Visualize volume images and objects in real time using a rich selection of rendering modes.
Automatically or manually identify objects based on morphology

Software Link: Imaris - Imaging and microscopy software

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IQbase - image organization Tool

IQbase image database will help you to preserve your organization's images and data while using a streamlined workflow that fits your needs.

Manage Your Valuable Image Data
Your organization spends time and money acquiring images. With IQbase, you can easily store and access this image data. Save time, save corporate knowledge, and save money.

Share and Search for Images Online
Share and search for archived images online via the web.

Quickly Find What You are Looking For
Use sophisticated search and query tools to find exactly what you are looking for. Locate images using metadata, keywords and other related information.

Streamline Your Workflow
IQbase offers a flexible interface that lets you archive and access images using techniques that fit your workflow.

Review and Compare Archived Images
Gain a better understanding of your archived images by using the many built-in tools for reviewing and comparing images data.

Report Your Findings
Share your image data using tools that allow you to quickly export to PowerPoint and create template-based reports.

Software Link: IQbase - image organization Tool

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BioDraw - Software to Draw Biological Pathways

BioDraw is a desktop application for drawing, sharing, and presenting biological pathways. BioDraw makes it easy to draw biological pathways. Common pathway elements (membranes, DNA, enzymes, receptors, reaction arrows, etc.) are built in, and other elements may be imported. The pathways you create with BioDraw can be exported for use in presentations, grant proposals, and publications.

Software Link : BioDraw - Software to Draw Biological Pathways

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BioQuant Life Science - Imaging and microscopy software

A universal digital pathology analysis application. It provides batch processing tools, semi-automated tools, and manual tools for the analysis of 2 and 3d morphology and densitometry.

Details

The BIOQUANT LIFE SCIENCE software enables cutting edge bioscience research in animal models. It supports high-throughput immunofluorescence and immunohistochemistry, stereology, denstiometry, and 3D modeling. Primary applications include developmental neuroscience, traumatic brain/spinal cord injury, glaucoma, eye-movement disorders, cardiovascular disease and muscle disorders. 

 

Software Link : BioQuant Life Science - Imaging and microscopy software 

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BioQuant Osteo - Imaging and microscopy software

A digital pathology analysis application specifically for bone histology. It provides batch processing tools, semi-automated tools, and manual tools for the analysis of 2 and 3d morphology and densitometry.

Details

The BIOQUANT OSTEO software enables cutting-edge bone biology research in animal models. It supports both high-throughput automation and precise manual interaction for ASBMR standard bone histomorphometry. Unique tools simplify skeletal phenotyping, help characterize cancer metastasis, aid in forensic anthropology, and quantify implant osseointegration. 

Software Link : BioQuant Osteo - Imaging and microscopy software

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ImageJ - Image Analysis Software

Runs Everywhere:
ImageJ is written in Java, which allows it to run on Linux, Mac OS X and Windows, in both 32-bit and 64-bit modes.
Open Source:
ImageJ and its Java source code are freely available and in the public domain. No license is required.
User Community:
ImageJ has a large and knowledgeable worldwide user community. More than 1700 users and developers subscribe to the ImageJ mailing list.
Macros:
Automate tasks and create custom tools using macros. Generate macro code using the command recorder and debug it using the macro debugger. More than 300 macros are available on the ImageJ Web site.
Plugins:
Extend ImageJ by developing plugins using ImageJ's built in text editor and Java compiler. More than 500 plugins are available.
Toolkit:
Use ImageJ as a image processing toolkit (class library) to develop applets, servlets or applications.
Speed:
ImageJ is the world's fastest pure Java image processing program. It can filter a 2048x2048 image in 0.1 seconds (*). That's 40 million pixels per second!
Data Types:
8-bit grayscale or indexed color, 16-bit unsigned integer, 32-bit floating-point and RGB color.
File Formats:
Open and save all supported data types as TIFF (uncompressed) or as raw data. Open and save GIF, JPEG, BMP, PNG, PGM, FITS and ASCII. Open DICOM. Open TIFFs, GIFs, JPEGs, DICOMs and raw data using a URL. Open and save many other formats using plugins.
Image display:
Tools are provided for zooming (1:32 to 32:1) and scrolling images. All analysis and processing functions work at any magnification factor.
Selections:
Create rectangular, elliptical or irregular area selections. Create line and point selections. Edit selectoins and automatically create them using the wand tool. Draw, fill, clear, filter or measure selections. Save selections and transer them to other images.
Image Enhancement:
Supports smoothing, sharpening, edge detection, median filtering and thresholding on both 8-bit grayscale and RGB color images. Interactively adjust brightness and contrast of 8, 16 and 32-bit images.
Geometric Operations:
Crop, scale, resize and rotate. Flip vertically or horizontally.
Analysis:
Measure area, mean, standard deviation, min and max of selection or entire image. Measure lengths and angles. Use real world measurement units such as millimeters. Calibrate using density standards. Generate histograms and profile plots.
Editing:
Cut, copy or paste images or selections. Paste using AND, OR, XOR or "Blend" modes. Add text, arrows, rectangles, ellipses or polygons to images.
Color Processing:
Split a 32-bit color image into RGB or HSV components. Merge 8-bit components into a color image. Convert an RGB image to 8-bit indexed color. Apply pseudo-color palettes to grayscale images.
Stacks:
Display a "stack" of related images in a single window. Process an entire stack using a single command. Open a folder of images as a stack. Save stacks as multi-image TIFF files.

Software link ImageJ - Image Analysis Software

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BioQuant Scan - Imaging and microscopy software

BIOQUANT is excited to be participating in the next generation in digital imaging. Imagine being able to generate large, high resolution digital scans of all of your slides. These scans can be shared with others, archived and retrieved, and quantified with the BIOQUANT Image Analysis Software. BIOQUANT offers slide scanning options for a variety of budget needs. We also support images from external slide scanners, such as the Olympus FSX100 and Aperio ScanScope.

BioQuant Scan - Imaging and microscopy software

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Imaris MeasurementPro - Imaging - microscopy software

Imaris MeasurementPro enables researchers to extract critical statistical parameters from their microscopy images thus allowing for the quantification of scientific findings. Imaris MeasurementPro adds shape, size, and intensity based measurement capabilities to the volume rendering, surface rendering and object detection features of Imaris. It allows researchers to interactively classify, group, and filter segmented objects based on any of the calculated statistics.

Details

Because Your Image Is More Than A Pretty Picture

Imaris MeasurementPro enables researchers to extract critical statistical parameters from their microscopy images thus allowing for the quantification of scientific findings. Imaris MeasurementPro adds shape, size, and intensity based measurement capabilities to the volume rendering, surface rendering and object detection features of Imaris. It allows researchers to interactively classify, group, and filter segmented objects based on any of the calculated statistics.

The ability to visualize biological processes and structures at finer levels of detail is one of the pillars of life sciences research. Another is measurement. In addition to the speed, precision and ease-of-use of Imaris, MesurementPro adds a set of high-performance tools to analyze your multidimensional image data.
The fast and easy generation of statistics in Imaris MeasurementPro allows you to quickly access the most relevant statistical parameters with the simple click of a button. These statistics provide insights into the biological properties of your sample; thus, allowing you to spend less time calculating numerical data and more time interpreting biological results. Measure distances in 3D, areas, volumes, voxel intensities, as well as identify objects based on intensity and size.

Imaris MeasurementPro has three components:
An extension of Imaris that enables the calculation and display of many statistical measurements from both voxel data and segmented objects.
A component for interactive 3D distance and line intensity measurements.
A mechanism to construct 3D surface objects from 2D semi-automatically drawn contours.

Full time 3D/4D interactivity, immediate statistical and visual feedback are features that set MeasurementPro apart from the competition. Once statistics are generated for segmented objects, you can filter and classify the results based on any one or combination of the statistical parameters calculated. As you select in a histogram of values, the objects that meet the selected criteria are visually identified in real time. You can also look at the statistics for all objects as a list and by selecting a value from the list; the object meeting those criteria instantly is highlighted in the fully interactive 3D/4D view. Alternatively, you can click into the visual image to select an object or group of objects, and the statistical values for those objects are immediately selected. The analysis routine, i.e. the steps and settings selected during the creation wizard, are saved in the "Scene File" and can be re applied to different data sets when required.

Imaris MeasurementPro takes the guesswork out of evaluating the statistical results by allowing the user to choose their preferred selection method and making selection of objects easy.

Once the desired statistics are selected they may be exported as plain text or a Microsoft® Excel file for further analysis. Exported statistical results are always identified by an Object ID" so that every statistical parameter can be easily correlated back to the original image. Simply type in the "Object ID" in Imaris 

 

Software Link: Imaris MeasurementPro - Imaging - microscopy software

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ImageWarp - Imaging and microscopy software

ImageWarp is universal image analysis, processing and editing software, which combines the power of graphic development environment, comprehensive image analysis toolset, and programming development techniques.

Designed to work under Windows XP/Vista/7, imageWarp offers full compatibility with GigE Vision and FireWire cameras, BitFlow imaging hardware and standard video capture devices, hundreds of high-performance image processing and measurements functions, built-in automatic scripting language with VB-like integrated development environment, databases and spreadsheets support, and various graphic representation of output data.

Unlike any other image analysis software, imageWarp incorporates graphic editing tools and functions that work with a wide variety of image types including 16-bit, 32-bit and 64-bit (complex) images.

A multiple window interface allows for simultaneous display of static and live images, charts, and measurements for the rapid creation of custom applications and development of new imaging techniques.

ImageWarp employs a multithreading processing engine, which provides parallel execution of several functions at the same time and automatic parallelization for systems with multiple CPUs.

Automatic and interactive measurement functions support more than 100 built-in and user-defined geometrical, optical and topological parameters. A number of proprietary processing algorithms and interface innovations make imageWarp one of a kind.

Software Link : ImageWarp - Imaging and microscopy software

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softWoRx® Explorer 2.0 - Imaging and microscopy software

softWoRx® Explorer 2.0 file viewer makes it easy to open images anywhere. The software package makes it possible to visualize and analyze data in 2D, 3D or 4D. It also allows for the comparison of images side-by-side as well as the ability to annotate, animate and export into multiple image and movie formats.

Compatible with Windows 7 and Mac OS 10.

New Features:

• Tabbed images
• Montage View
• Wavelength View
• 3D Volume View
• Segmentation
• Charting

Core Features and Tools:

• Wavelength Select
• Z - Control
• T (time) - Control
• Able to display images larger than available memory
• On screen scale bar annotation on/off (overlayed)
• On screen Wavelength and Z annotations on/off
• On screen time stamp annotations on/off
• Supports Copy and Paste of image to other applications
• Print image window
• Scaling Tool with Histogram
• Wavelength Color Tool
• 4D Measurement Tool
• Data Inspector Tool
• 4D Animation Tool
• ROI (rectangle)

Import Formats and Features:

• Auto detect file format on Open
• Auto load MultiFile TIFF sequences
• Able to load images or sequences larger than memory available
• Supports loading 2D sequences (X/Y)
• Supports loading 3D sequences (X/Y/Z)
• Supports loading 4D sequences (X/Y/Z/ wavelength)
• Supports loading 5D sequences (X/Y/Z/ wavelength /Time)
• Supports filters on directory listings (*.tiff / *.ome / *.dv / supported files / all files)
• Import TIFF, MultiFile TIFF and MultiFrame TIFF
• Import DeltaVision image files
• Import OME (Open Microscopy Environment)

Export/Save Formats and Features:

• Supports specifying pixel size
• Supports specifying scaling method
• Supporting specifying 5D parameters during save (X/Y/Z/ Wavelength /Time)
• Displays preview of image saved (Photoshop, JPEG)
• Export to TIFF and auto-named MultiFile TIFF (Z, T, Wavelength)
• Export to OME (Open Microscopy Environment)
• Export to DeltaVision image files
• Export to MPG4, AVI, QuickTime, Flash and M4V (iTunes) movie formats
• Export to JPEG and PSD (Photoshop) 

Software Link: softWoRx® Explorer 2.0 - Imaging and microscopy software 

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